Gene detail information of Glyur000494s00017403 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| NR | XP_009595128.1 | 7.53E-35 | PREDICTED: classical arabinogalactan protein 10-like [Nicotiana tomentosiformis] |
| trEMBL | tr|K4C4A6|K4C4A6_SOLLC | 1.00E-23 | Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc06g016790.1.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00494 | 81748 | 82275 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 40.142 |
| SRR1783600 | control | 39.660 |
| SRR1783602 | moderate drought stress | 23.451 |
| SRR1811619 | moderate drought stress | 22.787 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 77.064 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 73.752 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 12.138 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 10.988 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 101.193 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 98.235 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 22.646 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 20.509 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 28.820 |
| SRR2868004 | Drought Stress (root) | 18.496 |
| SRR2967015 | Control (root) | 21.221 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 29.560 |
| SRR9715740 | Leaf | 30.966 |
| SRR9715741 | Leaf | 18.685 |
| SRR9715739 | Root | 153.551 |
| SRR9715742 | Root | 61.711 |
| SRR9715743 | Root | 76.812 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 314.838 |
| SRR8749028 | MeJA induced 9h | 172.831 |
| SRR8749029 | MeJA induced 9h | 279.034 |
| SRR8749030 | Uninduced | 126.155 |
| SRR8749031 | Uninduced | 54.026 |
| SRR8749032 | Uninduced | 100.301 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 22.135 |
| SRR8400027 | Control - Root | 40.193 |