Gene detail information of Glyur000494s00017398 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G37190.1 | 2.00E-82 | Ribosomal protein L11 family protein |
| NR | XP_006837179.1 | 1.92E-112 | hypothetical protein AMTR_s00105p00048810 [Amborella trichopoda] |
| COG | NP_069374.1 | 2.00E-23 | 50S ribosomal protein L11P [Archaeoglobus fulgidus DSM 4304] |
| Swissprot | tr|O50003|RL12_PRUAR | 4.00E-109 | 60S ribosomal protein L12 |
| trEMBL | tr|W1NWL4|W1NWL4_AMBTC | 7.00E-113 | Uncharacterized protein {ECO:0000313|EMBL:ERN00033.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00494 | 62386 | 62886 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000494s00017398.1 | PF03946.9 | Ribosomal_L11_N | 13 | 70 | 5.20E-17 |
| Glyur000494s00017398.1 | PF00298.14 | Ribosomal_L11 | 75 | 144 | 4.20E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 673.372 |
| SRR1783600 | control | 679.096 |
| SRR1783602 | moderate drought stress | 347.667 |
| SRR1811619 | moderate drought stress | 352.723 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 736.939 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 727.975 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 166.344 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 158.739 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 514.097 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 512.452 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 246.337 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 245.776 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 684.333 |
| SRR2868004 | Drought Stress (root) | 371.068 |
| SRR2967015 | Control (root) | 359.708 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 388.680 |
| SRR9715740 | Leaf | 345.025 |
| SRR9715741 | Leaf | 298.263 |
| SRR9715739 | Root | 984.147 |
| SRR9715742 | Root | 571.938 |
| SRR9715743 | Root | 612.822 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1603.029 |
| SRR8749028 | MeJA induced 9h | 479.657 |
| SRR8749029 | MeJA induced 9h | 1082.228 |
| SRR8749030 | Uninduced | 121.866 |
| SRR8749031 | Uninduced | 59.218 |
| SRR8749032 | Uninduced | 186.008 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 706.553 |
| SRR8400027 | Control - Root | 569.692 |