Gene detail

Gene detail information of Glyur000494s00017389

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT5G60690.1	Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein
NR	XP_007132262.1	hypothetical protein PHAVU_011G079800g [Phaseolus vulgaris]
Swissprot	tr\|Q9SE43\|REV_ARATH	Homeobox-leucine zipper protein REVOLUTA
trEMBL	tr\|V7AJI7\|V7AJI7_PHAVU	Uncharacterized protein {ECO:0000313\|EMBL:ESW04256.1}

Sequence

Transcript Sequence

>Glyur000494s00017389.1
CTCACTGCCATGTTTCTCGAAGGGCGCGCTCACTTCTCTTCTATTCTCTTCTCTTCTCAGCTGCTCTCACATCACTTTATTCCCATCACTCTTTCTTCCTTATTTCCCCCCCTCTTCTCTTTCTGAATCCTCATTTCCTCATCCATCTTCAACATGCTTAGGGTTTCTCCTCTCTGATTATGCCTCAAAACAGCACTACAACAGCAACAGGGACAAGGATAAGGACAACTTCACTTTTCCCCCCCNACAAAGTTATCTCTTCCCAAACTCTTCATTCCTTCCTTCTACCTCAAGCTCCATTCCCAGCTTCTCTTCCCTCTTTTCCATCGAATCTGGTTCAAAAGAGAAAGCTCAAAGCCACCACCTCACCCTTCAAATTTTCAAACCACCATTCTCTCTCTCCCTCTTTCCCTCTCTTATTTCCTCTCACTTTCATATTTTTAATGGATTCCACTGAGCTTTGAGGATAACAATAAAAACCCGTAATTTGAGGCTCCAACCTTAAAAGAAAGTTTTTATTTTTTATTTTTAAACTTCACAAGCTGATGGTGTTGCTAGTGGAAGTGGAAGTGAAAAAAACAAGAGTGGAGGGCGGTGGTTGTTATTTTCCTAGTAGCTGGTGAAAAAAAAAACACGAGTTTCCCTGTTCACTATTTGTAACCATTCGGTGGGATTTTCTCGAAAGGGGGTTTCTTTTTTCCTTTTTCCTTTTTAATCTCTGAGCTGGTTTCACTTCACAAGAGGAGCACTTGTTGAGAAACCAAATAACGGTGGTTGCACAAAAATACACACTCTCTTTTTTTGTTCTGTCTATATTCATTTTTCACTTTAACGTTGCCAACCAAACCAATCCCCGAGAGTTACTACCCTTACCCATTTCCAAAGNGAGACTCTTTATTCCTAAATTTCTCATGCCAAGCCACGCCCTTTAGTACTAGGAGCAAGCAACAATCTTCTTCTACTACTACTTGTACTGGCTTTCTTTCTTCATTCCTTNATCGTGATTCGGAGTCTGTGTTTGTTGTGGGAAGAAGCATGGCTATGGCTGTGGCTCAACACAGAGAAAGCAGTAGCAGNGGTGGCAGCATTGATAAGCACCTTGATTCCTCTGGGAAATATGTTAGGTACACTGCTGAACAAGTTGAAGCTTTGGAGCGTGTTTATGCNGAGTGCCCCAAACCCAGTTCCCTCAGAAGGCAGCAATTGATCCGAGAATGCCCCATTCTTTCCAACATCGAACCAAAGCAAATCAAAGTTTGGTTCCAGAATCGAAGGTGTAGGGAGAAGCAGAGAAAAGAGGCTTCACGGCTTCAGACTGTGAACCGGAAACTGACCGCAATGAACAAGTTGTTGATGGAGGAGAATGATCGGTTGCAGAAACAGGTGTCACAGCTTGTGTGCGAGAATGGCTATATGCGGCAGCAATTGCATACNACATCAGCAGCAACTACTGATGCTAGTTGTGATTCGGTGGTTACTACTCCTCAGCAGCATTCCATGAGAGATGCTAATAACCCTGCTGGACTCCTATCAATTGCGGAGGAGACCTTGACAGAGTTCCTTTCAAAGGCTACAGGAACTGCTGTTGATTGGGTCCAGATGCCTGGGATGAAGCCTGGTCCGGATTCGGTTGGGATTTTTGCCATTTCACAAAGTTGCAGTGGAGTGGCAGCTCGAGCATGCGGTCTTGTTAGTTTAGAACCTACAAAGATTGCAGAGATCCTTAAAGATCGTCCATCTTGGTTTCGGGAGTGCCGGAACCTAGAAGTTTTCACAATGTTTCCTGCCGGAAATGGAGGAACNATTGAACTTGTTTACACACAGACATATGCTCCAACAACACTGGCTCCTGCCCGAGATTTCTGGACTCTGAGATACACTACAAGTTTGGACAATGGCAGTCTTGTGGTTTGTGAGAGGTCCCTGTCTGGTTCTGGATCGGGCCCTAATCCAGCTGCTGCTGCTCAGTTTGTAAGGGCTGAAATGCTCCCTAGTGGCTACTTAATTCGACCATGTGATGGTGGAGGGTCAATCATCCATATTGTAGACCACCTAAATCTTGAGCCATGGAATGTGCCAGAAGTGCTGCGACCACTTTATGAATCATCAAAGGTGGTAGCTCAAAAAATGACAATTGCGGCNCTTCGGTATATTAGGCAAATAGCTCAGGAAACAAGTGGTGAAGTGGTATATGGATTGGGTAGGCAGCCTGCTGTTTTGAGAACTTTCAGCCAAAGATTGANCAGAGGCTTCAATGATGCTGTAAATGGATTCAATGACGATGGGTGGTCNATACTGAATTGTGACGGCGCTGAGGATGTAATTATTGCTATTAATTCAACCAAGAATTTGAGTGGCACTTCTAATCCAGCAAGTTCCCNTACATTCCTTGGAGGAATTCTCTGTGCAAAAGCTTCTATGTTGCTCCAAAACGTTCCTCCTGCAGTTTTGGTTCGCTTTCTAAGGGAGCACCGTTCAGAGTGGGCTGATTTCAATGTTGATGCTTATTCTGCTGCATCACTGAAAGCTGGTACCTATGCCTNTCCAGGGATGAGGCCTACTAGATTCACTGGCAGTCAAATAATCATGCCTCTTGGCCATACAATTGAACACGAAGAGATGCTTGAAGTTATTAGGCTTGAAGGCCACTCTCTTGCTCAAGAAGATACTTTTGTTTCTCGGGACATTCATCTGTTACAGATATGTAGTGGAACTGATGAGAATGCNGTGGGGGCTTGTTCTGAGCTCATATTTGCTCCTATTGATGAAATGTTCCCGGATGATGCTCCTTTGGTGCCTTCTGGTTTCCGCATCATCCCATTGGATTCAAAACCAGGTGATAAAAAGGATGCAATGCCTTCAAATCGGACCCTAGATTTGACATCAGGTCTTGAAATTGGCCCAGCAACAACTCATGGCAGTGCAGATGCATCNTCAAGTCATAACACGCGATCAGTGTTGACTATTGCCTTTCAGTTCCCTTTTGACAGCAGTTTGCAAGATAATGTTGCAATCATGGCACGTCAATATGTCCGTAGTGTGATTGCCTCTGTGCAGAGGGTTGCCATGGCCATATCTCCATCCGGTATAAACCCGGCTGTCGGAACAAAACTTTCTCCTGGTTCTCCAGAAGCAGTTACACTAGCTCACTGGATCTGCCAGAACTTACTGAGATCGGAATCCCTTGTCGGCGACATGATGCTGAAACAGCTGTGGCATCATCAGGATGCTATTCTATGCTGTTCGCTGAAGTCTCTGCCGGTGTTCATCTTTGCAAATCAAGCTGGCCTTGACATGTTAGAAACAACACTAGTGGCTTTGCAAGACATCACATTGGATAAAATATTTGATGAGTCTGGACGCAAGGCGTTGTGTGCAGACTTTGCCAAGTTAATGCAACAGGGGTTTGCTTATCTTCCAGCTGGGATCTGCATGTCCACGATGGGGCGGCATGTTTCATACGAACAAGCCATAGCATGGAAAGTGCTTACAGCAGAAGATAACACTGTTCATTGCTTAGCTTTCTCTTTCATAAATTGGTCATTTGTATGAAAACCCAATTAGTGTGCACTGTTCCCCCCCCCCCCACATGAATATAATATGAAAATGAAAGAAGGGTAAAAGGAAAACGATATATTTGGAGGGAAAAAGAGATCCGAAATTTTGTTCATCTACTAGTGTAACAGGATCAGGTTTGCATTTAATTTGATTTCATTTATTTCTTATTTATTGCATCGACCAGATTGAATTAATCTTGTAAATTGTTGCTAGTGCTAGAGTGAAGTTGAGACTGGTAATGGTNATGGGGTACTTGTTTTTGTATGTAGAGTCTCTCCACTGGAGTTAAGCTAGACACAGTATGGTTACCACACA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00494	22944	29843	-

Gene family

Gene family	subfamily
Transcription Factors Family	HB

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003677 DNA binding

GO:0008289 lipid binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000494s00017389.1	PF00046.24	Homeobox	27	85	7.80E-16
Glyur000494s00017389.1	PF01852.14	START	167	374	1.90E-45
Glyur000494s00017389.1	PF08670.6	MEKHLA	705	838	2.60E-55

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	11.993
SRR1783600	control	12.100
SRR1783602	moderate drought stress	15.252
SRR1811619	moderate drought stress	15.127

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	18.826
DRR006520	Root Summer glycyrrhizin high producing strain	18.476
DRR006521	Root Winter glycyrrhizin high producing strain	15.286
DRR006522	Root Winter glycyrrhizin high producing strain	14.887
DRR006523	Root Summer glycyrrhizin low producing strain	19.410
DRR006524	Root Summer glycyrrhizin low producing strain	19.392
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.522
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.568

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	32.337
SRR2868004	Drought Stress (root)	39.705
SRR2967015	Control (root)	47.978

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.887
SRR9715740	Leaf	5.742
SRR9715741	Leaf	7.150
SRR9715739	Root	6.326
SRR9715742	Root	44.555
SRR9715743	Root	36.138

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	13.882
SRR8749028	MeJA induced 9h	8.102
SRR8749029	MeJA induced 9h	7.911
SRR8749030	Uninduced	0.790
SRR8749031	Uninduced	0.242
SRR8749032	Uninduced	0.795

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	52.107
SRR8400027	Control - Root	58.439