Gene detail

Gene detail information of Glyur000492s00023524

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G37650.1	2.00E-144	GRAS family transcription factor
NR	XP_003608528.1	0	GRAS family transcription factor [Medicago truncatula]
Swissprot	tr\|Q9SZF7\|SHR_ARATH	0	Protein SHORT-ROOT
trEMBL	tr\|G7JE24\|G7JE24_MEDTR	0	GRAS family transcription factor {ECO:0000313\|EMBL:AES90725.1}

Sequence

Transcript Sequence

>Glyur000492s00023524.1
ATGGATACGTTGTTTAGGCTAGTCAATTTCCAATACCAACAACCCGCGGAATATCCCTCCCTCAACTCCACCGCCGCAGCAACAACAACATCCAGCAGCTCTAGATCCTCCTCCCGACAAAACTACCACCATNACTACTACAATAACAGTAATAATTACCATCAGGAAGAAGACGAAGAATGCTTCAACTTTTACATGGATAANAATGAAGAAGACCTTTCCTCGTCTTCTTCTAAACACTACTACAACCCTTATTACCCCCACCATGCATCATCCACCAGTGCCACTACTGATCATTATCCCACCGCCACCACCTTTGGCTTCAACACAAACACAACCACCCCCACCGATTACTACTCCTTCTCATCGCCCACCCCTGATATTCCCTTCTTCAACTTTGAACTCTCCGGAGGCACGTGGGCACCCAACCTCCTCCTCGAGACCGCACGTGCCATTTCCGACAAGGACAGCAACCGAATCCAACACCTCATGTGGATGTTGAACGAGGTGAGCTCCCCATACGGAGACACCGACCAGAAGCTCGCAGCGTATTTCCTTCAAGCCCTGTTCAGCCGCGTCACCGAAGCAGGGGACCGAACCTACAAAACCTTAGCCTCGGCGTCGGAGAAAACAACGTGCTCCTTTGACTCCACGAGGAAGGTGCTGTTGAAGTTCCAGGAGGTTAGCCCCTGGACGACGTTTGGCCACGTGGCATCCAACGGTGCCATCCTGGAGGCACTCGAAGGGAGCCCTAAGCTCCACATCGTGGACATCAGCAACACGTATTGCACCCAATGGCCCACACTATTGGAAGCCCTCGCCACGCGCTTCGACGACACACCGCACTTGCGTTTGACAACCGTCGTAACCGCCAAACCCGTTCAGCGGGTCATGAAAGAGATAGGTGCCAGGATGGAGAAATTCGCTAGGCTCATGGGAGTGCCGTTTAAATTTAACGTCGTTTTCGGTGATCTCAGGGAGTTGAACTTGTCCAAGTTAGACATTAGGGAGGACGAGGCATTGGCCGTTAACTGCGTTAACTCCTTGCACTCGATTTCCGGCGCCGGAAACCACCGCGACGAGTTGTTGTCTCTGCTTCGGGGATTGAATCCTAGGGTTTTGACGGTGGTGGAAGAGGAGGCGGATTTATTATTGGAAGCCGGGGGTGGTTCGGATTTCGTGGAAGGGTTTGGGGAGTGTTTGAGGTGGTTTAGGGTTTACTTTGAGGCGCTGGAGGAGAGCTTTGCGAGGACCAGCGCCGAGCGGTTGGTGTTAGAGAGGGCGGCCGGGAGGGCTATCGTGGATTTGGTGGCTTGTGATTCTTCCGAGTCGGTGGAGCGGCGCGAAACGGCGTCGCGTTGGGCGCGCCGTATGCATGGCGGAGGGTTCAACGCGGTGCCGTTTAGCGAGGAGGTGTGTGACGACGTGAGGGCGCTATTGCGGAGGTACAGGGAGGGGTGGTCCATGGCGCAATGCTCCGACGCCGGAATATTCTTGTCGTGGAAGGACCAGCCGGTGGTGTGGGCCAGTGCATGGAGGCCTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00492	141344	142888	+

Gene family

Gene family	subfamily
Transcription Factors Family	GRAS

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0008356 asymmetric cell division

GO:0009956 radial pattern formation

GO:0048366 leaf development

cellular_component
GO:0005634 nucleus

molecular_function

GO:0003700 transcription factor activity, sequence-specific DNA binding

GO:0043565 sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000492s00023524.1	PF03514.9	GRAS	143	513	1.10E-107

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.649
SRR1783600	control	1.117
SRR1783602	moderate drought stress	0.647
SRR1811619	moderate drought stress	0.313

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.591
DRR006520	Root Summer glycyrrhizin high producing strain	0.518
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.425
DRR006524	Root Summer glycyrrhizin low producing strain	0.514
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.265
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.240

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.394
SRR2868004	Drought Stress (root)	8.206
SRR2967015	Control (root)	6.451

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.973
SRR9715740	Leaf	0.435
SRR9715741	Leaf	0.556
SRR9715739	Root	7.797
SRR9715742	Root	5.510
SRR9715743	Root	4.937

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.184
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.079
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.351
SRR8400027	Control - Root	7.340