Gene detail

Gene detail information of Glyur000492s00023518

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT2G14820.1	Phototropic-responsive NPH3 family protein
NR	XP_006579940.1	PREDICTED: BTB/POZ domain-containing protein NPY2-like isoform X1 [Glycine max]
Swissprot	tr\|O80970\|NPY2_ARATH	BTB/POZ domain-containing protein NPY2
trEMBL	tr\|I1K2D2\|I1K2D2_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA05G22380.1}

Sequence

Transcript Sequence

>Glyur000492s00023518.1
GAGAAAAGGTGGTGGTGACATGATGGTGGGGGCGAGGAGGGTGCTGATTCAAAAGCTCTGAGAGAGAAAGATAGAGAAGGAGCATTATTCTGATATATGATGGTTGGCTTTTTGTGTTTGTGTAGCTAGCTGCGGTGGCTGTCAAAGGATGAGGATTAACAGCTCATCTTTCTGAAAGGTTGGGGGTGGGGTGCATGGTTTCTGTGTGATATGTGGATTGTGGGGTTTTCTTCTTTCGAGAATATGGTGCTTATCTACTCATTCAATACAACTCTGTACTGAACTCCTTGTCGTGTGCCTATTCCATTTCAGATTCTTCTTATTTGGCAGAACCAGACATGCATGATCAGATATCAGAAGATCTCTTTGATTAGCTCACACTCACACTACTCACACCTCTTTTGGGTAACCATACCCCATCCCCTGCTTCCACTTTCCTTTTCTTGTTTTTCCCCTTCTTCTTGTCCTGCAATCCCACTTTGGTTATTTATTCCCGGTAACAGAAGAACAATTTCTGAGNCTGGTACGTATTAATGCTGTGCTAATGCTTCTGTTGAGATTCATTCCTGTCCCTTCATCTTCTTTGTTTATTTATTTTCTTTGATGATCATTACTGTTTCCTCCAATTTTTCTCTTAATTCGTACATGTGTATACTGTCTTGTGTTGCAGAAGGTNCCTTGGCTTCAAAGGAGGGGCAGAACAGAAACTTGAGGTGGCAAAGGGTGTTGCTGGGGGTGTGTAATTTTGTTGTTGGAAACAACAAAAGCAAGAAGGAAAAGGAAGGGAATATCTATCTAGATTTAGAAACATATTGTAAATTTAACAAGGTTTGGGCGGTGGTGTCAGTGTTGAGCAAGTGGGGGTGTCTCTCATTCTGTATTTGAGAAATTATATAACTATGTGTTTGGGAATGACAGTCTGTTGTTTCTGTTGCCAATATTTCCTAACATGACCATTTTTTTGCCGGGGTCGTTGGGCTGTGTTACCCACGTTTTCTTAAAAAGTTATAACGTGCTCTCTGAGTCTCTTCCCATTTCAATTGCGCAAAAGAAAAACATACAATAAATGTTTATAAAAAAAAAACTATCTTGGCACTCTTACTGGCCTCGATTTGTGGAAAAGATTCGGTATTGATAGGAAAAATATACCATATGTGATCCTTCTTTCCTCATCTCTGGCTCACATTTTTCTTTCCATAAATCTGAACTGAGTCGGTGGTTTGCCTTTCATAGGTAGAGTGGAGTAGAGGCGGTGAGGTATTATAGGTTTCTGGAGCTTGTAGTGGAATCTAAGATTTGTATTCAGATAGGGAAAACGGAGTGAGTAACATATAGCTATTCNCTCTGGCCAAGATGAAGTTTATGAAACTTGGATCTAAGCCTGATTCTTTTCAGAATGATGGCGATAATATCAGGTATGTGGCAACTGAGTTGGCAACTGACATAGTCATTAATGTTGGGGATGTAAAATTTTATCTCCATAAGTTTCCTCTTCTGTCAAAAAGTGCTCGCTTCCAAAAGCTGGTGACAGACACAAATGATGAGAATAATGATGAAGTCTATATCCATGACATTCCTGGAGGACCTGCTGCNTTTGAAATATGTGCCAAGTTCTGTTATGGTATGACAGTCACTCTTAATGCATACAATGTCGTCGCCGCTCGCTGTGCAGCAGAATATCTGGAGATGTATGAAACTGTTGAGAAAGGAAATCTCATCTACAAGATTGAAGTCTTCCTCAACTCCAGCATTTTCAGGAGTTGGAAAGACTCAATTATTGTTCTTCAAACTACCAAGTCTCTTCTTCCATGGTCTGAGGAACTTAAGGTAGTGAGCCATGGCCTTGACTCCATAGCTGCCAAGGCATCAATTGAGACATCCAAGGTGGAGTGGTCATATACCTATAACAGAAAAAAGCTACCATCTGAAAGTGGTAATGATCCTTATTTGAATAGTGTGAGGAAACAATTAGTTCCAAAAGACTGGTGGGCGGAGGACCTTTGTGAGCTCCAACTTGATCTCTATGAACGAGTCATAACAACAATTATAACTAAAGGCAATGTTTCTGGTGTTGTAATCGGAGAAGCTCTAAATGCTTATGTATCAAGAAGGATGCCTGGTTTCAACAAGGGTGTGATCCAAGGAGATATCNTAAAGAATAGATTATTGTTGGAGACCATAGTCCGACTATTGCCCACGGATATGGGCAGTGTCTCTTTCAGTTTCTTGCTGAAGTTATTAAGGACAGCTATTCTATTGGAATGTGATGAGTTGGCAAGATCCGAATTGATCAGGAGAATAGGTCAGTGCCTTGAGGAGGCTAAGGTGGCTGATCTNTTGATTCGTGCCCCAGTTGGAGAGGCAATTTATGATGTTGATACTGTCCAAAGGCTAGTTGAAGAGTTTGTAGCTCATGAGCTGCATGCTCAGACTGATTCTCTGTTGGAAGANGACTTGCATGAGACCGGAAGCCCCAGAATGGTATCAGACCCTTCTAAGGTTAAGGTAGCAAAACTGGTNGATAGCTATCTTGCTGAGATTGCACGTGATCCCAATTTACCTCTTTCAAAATTTGTAAATCTTGCTGAATTGGTATCAAGTTTCCCAAGAGCAACTCATGATGGCCTTTACCGTGCCATTGACATGTATTTAAAGGAACATCCTGGAATCNGCAAGAACGAGAGGAAAAGAATATGTAGGTTGATGAACTGCAGGAAATTGTCTGCAGATGCTTGCATGCATGCTGTGCAGAACGAGCGGCTTCCAATGCGTGTTGTTGTGCAGGTTCTCTTCTTCGAGCAGCTGAGAGCAACATCTTCTGGAGGGAACAGCACACCGGAACTTCCNGGGTCCATCAAGGCCTTGTTTCCCGACGCAGAAGAGGAATGGGAAGCCGCGGGAACAATGGAAGACGCGCAATCTCTGAAAGGGGAAGAACTTGCTACCCTAAACTTATCAGGTGGAGACAGCGCAGTTAGCAGCAGAAATGGCAATGATGGTTATAAAGGAAACACTCAGAAAGTTGTTGCTACTAAAAGGAAAGGTCTCATGTCAAAAAAGATATTCTCTAAGATTTGGTCAAGCAAGGAAAAAAGTGGTGAGCTAACTAACTCTGATACATCAGAGAGCCCTGCTTCTACTGTTGTAGAGGAAACAAAATCTACCCCATCTAGAAGTAGGAGGCACTCAGTATCTTAGACCATGTTCTGCAGATTTTGAGATCCATTCACTTATTGTATAATCATCTCACTCAAGTAACATTAGGAGAGTTAGACCAGATGACACAACGGAACTAGCAGCAAATGTTGGCATGTGGCTAAAAAAATGAAGCACCAAGAGAAAAGTATGTGTTTATTGTGGCTATATCACTCCTCTGGGGTTGTAACTTCCAATTAGCCATTACTGGTCTTAGGATTAGAAATGAGCTCAGAGCTCTAGTGATGACTCAGTTTTGATGTACTATAATGAGGAAAAGGAATGTCATTGCTCAGTTTTAAGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00492	88792	94881	-

Gene family

Gene family	subfamily
Ubiquitin Family	BTB

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0009958 positive gravitropism

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000492s00023518.1	PF00651.26	BTB	28	117	8.50E-09
Glyur000492s00023518.1	PF03000.9	NPH3	209	461	6.60E-88

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.308
SRR1783600	control	1.243
SRR1783602	moderate drought stress	2.248
SRR1811619	moderate drought stress	2.270

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.996
DRR006520	Root Summer glycyrrhizin high producing strain	4.020
DRR006521	Root Winter glycyrrhizin high producing strain	0.541
DRR006522	Root Winter glycyrrhizin high producing strain	0.512
DRR006523	Root Summer glycyrrhizin low producing strain	2.764
DRR006524	Root Summer glycyrrhizin low producing strain	2.733
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.727
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.721

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.198
SRR2868004	Drought Stress (root)	7.824
SRR2967015	Control (root)	7.109

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.593
SRR9715740	Leaf	3.473
SRR9715741	Leaf	1.508
SRR9715739	Root	0.539
SRR9715742	Root	4.022
SRR9715743	Root	3.573

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.041
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.627
SRR8400027	Control - Root	13.513