Gene detail

Gene detail information of Glyur000492s00023513.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G23070.1	2.00E-174	Protein kinase superfamily protein
NR	KEH31524.1	0	casein kinase II subunit alpha-like protein [Medicago truncatula]
COG	NP_868627.1	7.00E-16	protein kinase yloP- serine/threonine protein kinase [Rhodopirellula baltica SH 1]
Swissprot	tr\|O64816\|CSK2P_ARATH	0	Casein kinase II subunit alpha, chloroplastic (Precursor)
trEMBL	tr\|A0A072UNW2\|A0A072UNW2_MEDTR	0	Casein kinase II subunit alpha-like protein {ECO:0000313\|EMBL:KEH31524.1}

Sequence

Transcript Sequence

>Glyur000492s00023513.1
GGTTTGGGCGGCATCAAATGCTTTTTACTTGCAACTTTTAATTTTTTTTTTTTCCTCCTCCCATTTTCAATTTAATGGCCATAAGGCCCTTCCAATTCAACTTCTCGCGCGATAGATTGGTCTCTCTCTTCCGCACTTCTCAATCTCATTCCTTTCCCTCTTTTCTCCGCTCCTCCAAATTCCCCCAAACTACTATCGCNATTGCCTCTGCCCCCTCTTTCTCCCTCCGCCACCTAGCTGCGTTCGCGCCGCCTCCGTCACCGCCGCACGACCTCCGCCGCAGGCCTCCTCTGCCTCCGCCCGACGTCATGTCACAGAAGTTTGGAAAATCCACTCGCCGCCCCGGCGCTTCCTCCAAGGCGAGGGTTTATGCTGACGTCAACGTTATTCGACCCAAGGAATATTGGGACTACGAGACCCTCACCGTTCAGTGGGGGGAGCAAGATGATTATGAGGTGGTGAGGAAGGTAGGTAGGGGGAAATACAGTGAGGTGTTTGAAGGCGTTCACTGCACTGATAATGAAAAATGTGTCATTAAGATTCTGAAACCTGTGAAGAAGAAGAAGATCAAGAGGGAAATCAAAATATTACAAAATCTTTGTGGAGGGCCNAATATTGTAAAGTTGCTTGACATTGTTAGAGACCAGCAGTCAAAGACCCCAAGTCTTATATTTGAATATGTCAATAACACAGATTTTAAAGTGCTTTATCCTACATTGTCAGACTTTGATATACGATATTATGCACTGGATTATTGCCATTCACAAGGAATCATGCATCGGGATGTAAAGCCCCATAATGTGATGATTGATCATGAGCAGCGTAAGCTCCGCCTTATAGATTGGGGGCTTGCAGAGTTCTATCATCCTGGGAAAGAATATAATGTTCGTGTGGCTTCAAGATATTTCAAAGGTCCTGAGCTTCTTGTTGATCTTCAAGACTATGATTACTCTCTAGATTTATGGAGTCTTGGTTGTATGTTTGCCGGGATGATATTCCGGAAGGAGCCATTCTTTTATGGACATGATAACTATGATCAACTGGTCAAGATAGCTAAGGTACTTGGGACAGATGAATTAAATGCATACTTGAATAAGTATCGAATTGAGTTGGACCCACATTTTGCAGCACTTATTGGGAGGCATAGCCGGAAACCATGGGCAAAGTTCATCAATTTAGAAAATCAGCACTTGGCTGTTCCTGAGGCTGTTGACTTTGTTGACAAGTTACTACGATATGATCACCAAGAACGGCCCACTGCAAAAGAAGCCATGGCCCATCCTTACTTCAATCCAGTTAGAAATGCAGAAAGTAGTAGAGCTCGTGCACATTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00492	59924	64498	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:4.5.3

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K03097	CSNK2A	EC:2.7.11.1	Ribosome biogenesis in eukaryotes	map03008
			Wnt signaling pathway	map04310
			NF-kappa B signaling pathway	map04064
			Mitophagy - yeast	map04139
			Adherens junction	map04520
			Circadian rhythm - plant	map04712
			Measles	map05162
			Herpes simplex infection	map05168
			Epstein-Barr virus infection	map05169

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000492s00023513.1	PF00069.20	Pkinase	126	405	1.30E-55

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	42.897
SRR1783600	control	43.050
SRR1783602	moderate drought stress	38.121
SRR1811619	moderate drought stress	38.039

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	33.824
DRR006520	Root Summer glycyrrhizin high producing strain	33.416
DRR006521	Root Winter glycyrrhizin high producing strain	47.788
DRR006522	Root Winter glycyrrhizin high producing strain	47.356
DRR006523	Root Summer glycyrrhizin low producing strain	37.633
DRR006524	Root Summer glycyrrhizin low producing strain	38.055
DRR006525	Leaf Summer glycyrrhizin high producing strain	34.237
DRR006526	Leaf Summer glycyrrhizin high producing strain	34.341

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	68.433
SRR2868004	Drought Stress (root)	68.439
SRR2967015	Control (root)	61.476

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	45.333
SRR9715740	Leaf	47.482
SRR9715741	Leaf	50.241
SRR9715739	Root	33.068
SRR9715742	Root	33.903
SRR9715743	Root	33.467

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	32.552
SRR8749028	MeJA induced 9h	33.723
SRR8749029	MeJA induced 9h	28.677
SRR8749030	Uninduced	27.935
SRR8749031	Uninduced	31.995
SRR8749032	Uninduced	27.567

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	53.965
SRR8400027	Control - Root	47.931