Gene detail information of Glyur000492s00023509 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G50300.1 | 9.00E-79 | HXXXD-type acyl-transferase family protein |
| NR | XP_003549969.1 | 0 | PREDICTED: uncharacterized acetyltransferase At3g50280 [Glycine max] |
| Swissprot | tr|Q9SND9|Y3028_ARATH | 8.00E-98 | Uncharacterized acetyltransferase At3g50280 |
| trEMBL | tr|I1MVB9|I1MVB9_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G16330.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00492 | 46048 | 47403 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000492s00023509.1 | PF02458.10 | Transferase | 3 | 447 | 3.60E-71 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 413.560 |
| SRR1783600 | control | 418.589 |
| SRR1783602 | moderate drought stress | 909.590 |
| SRR1811619 | moderate drought stress | 906.082 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 271.469 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 268.115 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.940 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.849 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 72.392 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 70.167 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.344 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.306 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.878 |
| SRR2868004 | Drought Stress (root) | 5.431 |
| SRR2967015 | Control (root) | 1.425 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.459 |
| SRR9715740 | Leaf | 1.551 |
| SRR9715741 | Leaf | 2.110 |
| SRR9715739 | Root | 225.072 |
| SRR9715742 | Root | 332.385 |
| SRR9715743 | Root | 301.750 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.003 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 133.990 |
| SRR8400027 | Control - Root | 200.921 |