Gene detail information of Glyur000492s00023503 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G33890.2 | 3.00E-53 | |
| NR | XP_006579933.1 | 0 | PREDICTED: uncharacterized protein LOC100816491 isoform X1 [Glycine max] |
| trEMBL | tr|K7KPE5|K7KPE5_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA05G22161.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00492 | 9238 | 10275 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000492s00023503.1 | PF12767.2 | SAGA-Tad1 | 10 | 277 | 5.60E-57 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.008 |
| SRR1783600 | control | 3.208 |
| SRR1783602 | moderate drought stress | 4.298 |
| SRR1811619 | moderate drought stress | 4.303 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 11.535 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 11.496 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 7.530 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 7.824 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 12.336 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 12.249 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.002 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.749 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 7.167 |
| SRR2868004 | Drought Stress (root) | 10.656 |
| SRR2967015 | Control (root) | 9.477 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 12.516 |
| SRR9715740 | Leaf | 11.282 |
| SRR9715741 | Leaf | 19.392 |
| SRR9715739 | Root | 9.447 |
| SRR9715742 | Root | 25.195 |
| SRR9715743 | Root | 21.716 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 12.049 |
| SRR8749028 | MeJA induced 9h | 12.204 |
| SRR8749029 | MeJA induced 9h | 12.059 |
| SRR8749030 | Uninduced | 5.034 |
| SRR8749031 | Uninduced | 5.991 |
| SRR8749032 | Uninduced | 8.953 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.852 |
| SRR8400027 | Control - Root | 8.709 |