Gene detail information of Glyur000491s00023708 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G65890.2 | 5.00E-92 | ACT domain repeat 1 |
| NR | KHN36315.1 | 0 | [Protein-PII] uridylyltransferase [Glycine soja] |
| COG | YP_676565.1 | 2.00E-06 | PII uridylyl-transferase [Chelativorans sp. BNC1] |
| Swissprot | tr|Q9FHP1|ACR1_ARATH | 1.00E-120 | ACT domain-containing protein ACR1 {ECO:0000305} |
| trEMBL | tr|I1J9G4|I1J9G4_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G40340.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00491 | 121004 | 123938 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000491s00023708.1 | PF01842.20 | ACT | 79 | 146 | 1.00E-07 |
| Glyur000491s00023708.1 | PF01842.20 | ACT | 222 | 273 | 0.00015 |
| Glyur000491s00023708.1 | PF01842.20 | ACT | 302 | 364 | 3.40E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.752 |
| SRR1783600 | control | 0.732 |
| SRR1783602 | moderate drought stress | 1.122 |
| SRR1811619 | moderate drought stress | 1.109 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.772 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.701 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 67.993 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 66.790 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.283 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.152 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.750 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.779 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.497 |
| SRR2868004 | Drought Stress (root) | 3.964 |
| SRR2967015 | Control (root) | 3.089 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.938 |
| SRR9715740 | Leaf | 0.627 |
| SRR9715741 | Leaf | 0.586 |
| SRR9715739 | Root | 0.995 |
| SRR9715742 | Root | 1.997 |
| SRR9715743 | Root | 2.061 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.782 |
| SRR8749028 | MeJA induced 9h | 2.024 |
| SRR8749029 | MeJA induced 9h | 1.908 |
| SRR8749030 | Uninduced | 1.554 |
| SRR8749031 | Uninduced | 2.860 |
| SRR8749032 | Uninduced | 4.582 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.303 |
| SRR8400027 | Control - Root | 3.338 |