Gene detail information of Glyur000491s00023705 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| NR | XP_004511815.1 | 7.76E-32 | PREDICTED: uncharacterized protein LOC101513866 [Cicer arietinum] |
| trEMBL | tr|G7K2F6|G7K2F6_MEDTR | 5.00E-23 | VQ motif protein {ECO:0000313|EMBL:AES94507.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00491 | 110495 | 111004 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000491s00023705.1 | PF05678.9 | VQ | 72 | 93 | 1.30E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.559 |
| SRR1783600 | control | 4.754 |
| SRR1783602 | moderate drought stress | 6.612 |
| SRR1811619 | moderate drought stress | 6.556 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.037 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.895 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.573 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.798 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.866 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.976 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.547 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.543 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.988 |
| SRR2868004 | Drought Stress (root) | 20.517 |
| SRR2967015 | Control (root) | 7.658 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 26.787 |
| SRR9715740 | Leaf | 4.284 |
| SRR9715741 | Leaf | 35.733 |
| SRR9715739 | Root | 8.536 |
| SRR9715742 | Root | 14.924 |
| SRR9715743 | Root | 12.607 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 254.939 |
| SRR8749028 | MeJA induced 9h | 161.916 |
| SRR8749029 | MeJA induced 9h | 157.767 |
| SRR8749030 | Uninduced | 208.045 |
| SRR8749031 | Uninduced | 130.461 |
| SRR8749032 | Uninduced | 75.005 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 17.551 |
| SRR8400027 | Control - Root | 3.209 |