Gene detail

Gene detail information of Glyur000491s00023701

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G37680.2	1.00E-173	heptahelical protein 4
NR	XP_007156702.1	0	hypothetical protein PHAVU_002G010000g [Phaseolus vulgaris]
Swissprot	tr\|Q9SZG0\|HHP4_ARATH	0	Heptahelical transmembrane protein 4
trEMBL	tr\|V7CII3\|V7CII3_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW28696.1}

Sequence

Transcript Sequence

>Glyur000491s00023701.1
GAAATATGATGGTCTTCCCTTACCGCAGAATAAATGACGGAAAAAAAAGAAAAGAAAGCCTTTTAGTTTTAGATCAATAAAATAAAACAAATAAAAGCGTGGGAAATTCTTTAATTTTTCAATAATGCGGTAGGATATTTTATTTTATTTTAAAAAAAGTAAACTAGTTAACCCCGGAAAGGTTGGCGACTTGGCATAGCGCAAGACCAACAACCACCGTTGCGTCCAAACGGAGAGCGATAAAAACAAAGAAAGGATCGATAATTGATCTGTGGTGGCATCTCCGCATTTCCTCGAAGAATCTTCGGTCGTTAACATCTAAAATTTCTTGTGGGGTCCAATCAGTTCCTGGTTCGTCATCATCCACTTCCACCTCCGTCACAAATTTTCCCCGCAGCCTTGTTTTTTTTTTGTTTCATTTTGTTTTTTTTGTTTTCCTTCTTCATTCCCCTAATTAATTCACATATATTCATTCATTCATTCACACCTCTTTTCACCAGCATATTCTTCCCGNCTCTTCAATTTAGAGGATGGGCAGTGAAAATCGTGCTTTGATGGAGAACCAAGGGGTATGTTCAGGAAGGGAAGGGAAAGGGAAAAGGCTGTGGAAGAAGGTGAAGTACCAGCTGGTGGAGTACCACTGCTTGCCTGGTTACTTGCGAGACAATGAGTACATTCTTGGCCACTACCGATCCGAATGGCCCATGAAGCAGGTTTTGCTAAGCATCTTCACCATCCACAATGAAACTCTCAATGTTTGGACGCATTTGATTGGGTTCTTCCTGTTTCTGTCATTGACCATATACACTGCCGTGAAAATTCCAACTGTGGTAGATCTTAATTCGCTACAGCATTTTCCTGAAAAACTACAATCAGAACTTTTGACATGCCTACCTTCCATGCTTGATTTGCACAGACTCAGGGAGGAAATCTCAAGCTGGCATGTTAAAGAACTCTTGTATAATTGTTTGCCTGTAAGATTTTCCAGTAGCAATCATACTGATGTTTGTGTTCTGCATAGTGTAAAAGATGANGTGGTGAACATGATAGCACCGCTGGTGGTTAGACCAATTACAAGGTGGCCTTTTTTTGCATTTATGGGGGGTGCCATGTTTTGCTTGCTAGCTAGCAGTATCTGCCATCTCCTCTCTTGCCACTCTGAGCGCTTATCATACATTATGCTCAGGCTCGACTATGCTGGAATTGCTGCCCTGATATCTACCTCTTTCTATCCTCCAGTATATTACTCATTCATGTGTTACCCATTTTTCTGCAACCTTTACCTGGGCTTTATTACTCTATTGGGTATTGCCACCATNGTGGTTTCTCTCCTTCCAGTCTTTCAAACTCCAGAATTCCGCACCATCCGTGCGTCCCTCTTTTTTGGAATGGGNTTTTCTGGTGCAGGACCTATTCTGCACAAGCTTGTTCTGTTCTGGGGCGAGCCTGAGGTGTTTCACACAACTGGTTATGAGATTCTGATGGGTGCTTTGTATGGACTTGGAGCACTGGTTTATGCCACTAGGATTCCAGAACGATGGATGCCTGGGAAATTTGACATTGCTGGACACAGTCACCAATTGTTTCATGTGTTGGTGGTGGCTGGGGCATACACTCATTATCGTGCAGGGTTAGTTTATCTCAGGTGGCGCGACCTCCGNGGTTGTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00491	59453	63021	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0016021 integral component of membrane

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000491s00023701.1	PF03006.15	HlyIII	67	364	3.60E-79

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	13.204
SRR1783600	control	12.999
SRR1783602	moderate drought stress	11.316
SRR1811619	moderate drought stress	11.264

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.801
DRR006520	Root Summer glycyrrhizin high producing strain	9.903
DRR006521	Root Winter glycyrrhizin high producing strain	35.481
DRR006522	Root Winter glycyrrhizin high producing strain	34.291
DRR006523	Root Summer glycyrrhizin low producing strain	11.083
DRR006524	Root Summer glycyrrhizin low producing strain	11.121
DRR006525	Leaf Summer glycyrrhizin high producing strain	25.172
DRR006526	Leaf Summer glycyrrhizin high producing strain	25.698

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	33.451
SRR2868004	Drought Stress (root)	40.056
SRR2967015	Control (root)	38.496

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	34.781
SRR9715740	Leaf	41.816
SRR9715741	Leaf	58.813
SRR9715739	Root	15.297
SRR9715742	Root	18.246
SRR9715743	Root	15.764

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.372
SRR8749028	MeJA induced 9h	13.536
SRR8749029	MeJA induced 9h	6.805
SRR8749030	Uninduced	15.702
SRR8749031	Uninduced	18.593
SRR8749032	Uninduced	10.266

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	33.496
SRR8400027	Control - Root	36.577