Gene detail

Gene detail information of Glyur000491s00023700

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G22900.1	1.00E-146	Galactosyl transferase GMA12/MNN10 family protein
NR	XP_003539263.1	0	PREDICTED: galactomannan galactosyltransferase 1-like isoformX1 [Glycine max]
Swissprot	tr\|Q564G7\|GMGT1_CYATE	0	Galactomannan galactosyltransferase 1
trEMBL	tr\|I1LH49\|I1LH49_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA11G05020.1}

Sequence

Transcript Sequence

>Glyur000491s00023700.1
ATGGCAAAGCCCAGAAACAAACCCTCCTCCATATTCCTCNCCGATGGCTGTCTCTTCCTCGCAGGAGCATTCTCCGCACTTCTACTCGTTTGGGGTTTTTCCTCCTTCACAACCCCTATCCCCAACGACAACCCCAATTTCGACTCACTCTCCCGAAACCCTCCCCCAAACGACGTCGTCCTCCCCACCGCCCCCGACTTGCGTTTCGACCCACCAGACAGAACCTTCTACGACGACCCCGAAANGGGGTACACCATGGACACGACGGTTCGTGACTGGGACGAGAAGCGCCAGGAGTGGCTTCAGCTTCATCCCTCATTCGCCGCCGGAGCACGGGAAAGGGTCCTGATGGTGACCGGATCGCAGCCTTCGCCGTGCCGGAACCCCATCGGCGACCACCTCCTCCTGAGATTCTTCAAGAACAAGGTTGATTACTGCAGGCTCCACGGCTACGACATCTTTTACAACAATGCCCTTCTGCACCCGAAGATGTTCGCGTATTGGGCCAAGTATCCGGTGGTTAAGGCCGCGATGATGGCCCACCCTGAGGCCGAGTGGATCTGGTGGGTTGACTCGGACGCGATGTTCACCGACATGGAGTTCAAGCTCCCCCTCGAGCGCTACAGGGATCACAACCTCGTCGTTCACGGTTGGGCCCACCTCGTGCACGAGAAGCGGAGCTGGACGGGCCTAAACGCCGGCGTGTTCCTCATCCGTAACTGCCAGTGGGCTTTGGACTTCATGGACGCATGGGCCGGAATGGGCCCACAGACCCCGGATTACGAGAAGTGGGGCCAGACGCTTCGGTCAACTTTCAAGGACAAGTTCTTCCCTGAGTCAGACGATCAGACGGGCCTCGCTTACTTGATCGCGCTTGAGAAGGATAAATGGGCGGACAGGATTTATCTAGAGAGCGAGTATTATTTCGAAGGGTATTGGGAGGAGATTGTGGGGACGTTTGAGAACACTAGCGAGAGGTACGATGAGGTTGAGAGAGGGGTGCGCAGGTTAAGGAGGCGTCACGCGGAGAAGGTGAGTGAGAGTTATGGTGAGGTGAGGGAGGAGTATTTGAAGGGTGCTGGGTACGGTAAAGGGAGTTGGAGGAGACCGTTTGTTACGCACTTTACCGGTTGCCAACCCTGTAGTGGGAAGTATAATCAGATGTACACCGCCGATGCTTGTTGGAACGGCATGCGGAGGGCGCTTAATTTCGCCGATAATCAGGTCATGCGCAAATATGGTTTCCTACACCCGGATCTACGGGATAACGCCGTTTCCCCTGTACCTTTTGATTATCCCCAACCCTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00491	56328	57635	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT34

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0016021 integral component of membrane

molecular_function
GO:0016758 transferase activity, transferring hexosyl groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000491s00023700.1	PF05637.7	Glyco_transf_34	112	383	5.30E-72

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	12.917
SRR1783600	control	12.845
SRR1783602	moderate drought stress	9.352
SRR1811619	moderate drought stress	9.319

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	31.891
DRR006520	Root Summer glycyrrhizin high producing strain	31.963
DRR006521	Root Winter glycyrrhizin high producing strain	0.085
DRR006522	Root Winter glycyrrhizin high producing strain	0.083
DRR006523	Root Summer glycyrrhizin low producing strain	10.391
DRR006524	Root Summer glycyrrhizin low producing strain	10.358
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.597
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.667

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	25.906
SRR2868004	Drought Stress (root)	20.510
SRR2967015	Control (root)	15.325

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	10.752
SRR9715740	Leaf	1.635
SRR9715741	Leaf	3.149
SRR9715739	Root	11.250
SRR9715742	Root	7.544
SRR9715743	Root	9.248

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	22.798
SRR8749028	MeJA induced 9h	1.779
SRR8749029	MeJA induced 9h	2.516
SRR8749030	Uninduced	0.011
SRR8749031	Uninduced	0.090
SRR8749032	Uninduced	0.174

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	22.131
SRR8400027	Control - Root	26.694