Gene detail

Gene detail information of Glyur000491s00023698

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G53120.1	5.00E-58	Modifier of rudimentary (Mod(r)) protein
NR	XP_006576145.1	1.35E-115	PREDICTED: uncharacterized protein LOC100305851 isoform X1 [Glycine max]
Swissprot	tr\|Q3EBL9\|VP372_ARATH	3.00E-99	Vacuolar protein-sorting-associated protein 37 homolog 2
trEMBL	tr\|I1JPT7\|I1JPT7_SOYBN	5.00E-116	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA03G34540.1}

Sequence

Transcript Sequence

>Glyur000491s00023698.1
TATCCCTTAAAAAAAAAGGGATATATTATATAAGAAAATAAGAAGATTTTTGTTTCCACTTTCCTTGTCGCTCTGTTCTCTGAAATTTCGAGGGTTCACTTTATTTCTTCAGTTGGTGGAATCGGCAATTTGGAACCGATTAGCAATGTTCAGATTCTGGGGATCACAAGAGCAACAACCGCCGCAGGATGGTTCTTCACAGTCGTGGTATCCGCCATCTGTGGTGAGTTCCACGAGTTCTTCCAGGCCTGCTACACCTACTTCCTCTTCACAGAGACCTTCTTCGCATGTTCCTCCTGCAGAAGCTGCTGGAGTAATTGCTGCTTTGAAGGACAAGAGTGTCGATGAGTTACGGAAGCTTTTATCTGACAAAGACACTTATCAACAGTTCCTACATTCACTTGATCAGGTCAAGATTCAAACCAATCTGAAGGATGAACTTTGCAAGGAAAATTTGCAGCTTGCAGAGGAAAATCTACAAAAGGAACCTCGTATCATGGAAATTAGGAATCAATGTAGAATTATTCGGACAACCGAATTAGCTGCTGCTAAGGAGAAACTGAATGAGCTTGAGAAGCAGAAAGAAGAAATGTTAAAGTTGAACTCCCCAGCATCTCTTATCCAAAGGATTCAAGAGTCCGTGAACAAGACAGATGAGGAATCTGAAAATCTGCACCAGCATCTCCTTGACAGAGAGATTGACCTTGGAGCTTTTTTGCAAAAATACAAGAAGCTGCGTACCACATACCACAGGAGAACTCTTATACATCTTGCTGGTAAGACATCAACTATATGAGCACAACATATGGAATACGAAAATTAAGANAGTAACTCACTTGTTTTGGCGAGAATGTATTTGATTTTTGGTTCATTGTTGTCAATAGTTGGCTTTGGTCAAAGATACTAGTCACCAATTGTATAAGTTGTACTCGTANGGATAGAGCTACCTATGATAAATGAGAAACGTTTATATGTACAGCTTGAAAAATGAAAATTAGATTGTTCACTGTAGAGACTTATATTCATAAACACGTCTGTTTTTCATTATCAAGTAGTTTTGTGCTATCTTGAGAAGAGGTACGGGCGTATCTGCACCTTTGTTTTTTAGGTTTTGTGCTTTGCTACCTTTTAACAGTATTTTTCTGAAGAATATGCTGTAAGCTATGTTATAAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00491	40126	42690	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000491s00023698.1	PF07200.8	Mod_r	61	204	3.00E-38

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	20.546
SRR1783600	control	20.890
SRR1783602	moderate drought stress	25.736
SRR1811619	moderate drought stress	25.525

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	35.192
DRR006520	Root Summer glycyrrhizin high producing strain	34.623
DRR006521	Root Winter glycyrrhizin high producing strain	91.896
DRR006522	Root Winter glycyrrhizin high producing strain	89.372
DRR006523	Root Summer glycyrrhizin low producing strain	38.248
DRR006524	Root Summer glycyrrhizin low producing strain	38.138
DRR006525	Leaf Summer glycyrrhizin high producing strain	20.557
DRR006526	Leaf Summer glycyrrhizin high producing strain	20.498

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	29.690
SRR2868004	Drought Stress (root)	30.732
SRR2967015	Control (root)	31.740

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	18.036
SRR9715740	Leaf	26.060
SRR9715741	Leaf	24.773
SRR9715739	Root	3.219
SRR9715742	Root	12.448
SRR9715743	Root	10.719

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	26.354
SRR8749028	MeJA induced 9h	25.963
SRR8749029	MeJA induced 9h	28.381
SRR8749030	Uninduced	25.784
SRR8749031	Uninduced	33.966
SRR8749032	Uninduced	21.998

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	36.999
SRR8400027	Control - Root	36.974