Gene detail

Gene detail information of Glyur000491s00023692.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G49950.3	2.00E-62	telomere repeat binding factor 1
NR	XP_003517350.1	3.23E-145	PREDICTED: telomere repeat-binding factor 2 [Glycine max]
Swissprot	tr\|Q9FJW5\|TRB2_ARATH	4.00E-79	Telomere repeat-binding factor 2
trEMBL	tr\|I1J9F3\|I1J9F3_SOYBN	1.00E-145	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA01G40220.1}

Sequence

Transcript Sequence

>Glyur000491s00023692.1
TCGATTTTATCTGCGTGTAAATACACTCCAACTTCTCCTAATTCCCACCAACGCCCTTTCATTCTCTGATCCGTTACACCTTTCTCCATCGATTCTTCTTTTACTTTCGTTCCCTTTTTTCTCCCAATTCAAGTAAATTTTATGCCATCTATATTCCCAGGTCAATAGTAGTCAGATTTTTCTTATCTGTGGATGGACATGCAGAAGAAGACTGCATTCGACTTTCAATCTCTTCTCTAGAATAAAAGCAAAAACTGTACTGTGATAAAAAGGTTGTGGACTTCTTTTAATGGGTGCTCCTAAGCAGAAATGGACTGCAGAAGAAGAGGCAGCGTTGAAAGCTGGAGTAGCCAAGCACGGGGCTGGAAAATGGCGCACCATACTCACAGATCCAGAGTTCAGTGCCATTTTGCGCATGCGTTCAAATGTAGATCTCAAGGACAAATGGAGGAACATAAATGTGACAGCAATATGGGGATCCAGGCAGAAGGCAAAGCTTGCACTTAAAAGGAACCTACCTCCCCCCAAAACTGAAAATAACTGCACTGCATTGAGTACCGTAGTTCAACGTAATGAAGAAGTTGCTGATGCTAGGCCTCTGGCAGTTTCTGGTGGAACATCTCCTAATACCAAAGAACAAATATCAAGGTTGGATAATCTTATCTTAGAGTCTATTATCAAGTTGAAGGAGCCAGAGGGTTCTGACAGGGCCTCCATTGCTGCTTATATAGAGGATCAATACCGGTCTCCACCAAACCTCGGAAAGTTACTGTCAACAAAACTAAAGCATATGGTGGCAAGTGGCAAATTAATGAAGGTAAAGCATAAATACAGGATTGCAANAAATTCAACAATATCTGAGAAAAGAAGAAGCTCTTCCTTGTTACTCCTGGAAGGGAAGCCCAATGATTCTCCAAAAGCAGAGAAGCCTGATGTAAACATCCTTTCAAAATCACAAATTGATGCAGAGCTATCAAAAATGAAGGGTGTGACAGCTCAAGAGGCAGCGGCNGCGGCTGCAAAAGCAGTTGCAGAGGCAGAAGCTGCCATTGCTGAGGCAGAGGCAGCAGCTAGGGAGGCAGAGGCTGCAGAAGCCGAAGCAGAGGCCGCACGGGTGTTTGCAAAAGCAGCAAAGAAGGCACTCAAATGCAATACACTTCGTTTTTGATGGTGTCAGCTTCTGCATGGTTAACACTAGCAGTATATTTGGCTTTAGATCATAATTCTGCTGCTAGGCTGCCTGCATGTATTCAATTACTGTACATAATTTAGGCTTGTAAATTTGGGATGTACGGATTGATCTACAGANACATTTTATCAGTAGTCAGTAAGAGTTTATTATATTTTTTTACCTTATTTTTAAAGAAAGACATTGAGGCGAGGGTACGGAGTATTAGTGGTAGATTGGAAGTAGCGATTGAGTGTAAATTGTAATGGAACGTGTGATAGACACCATCTCATAGTAAATGAAAGAATCCAATTTTGAGTTGTGTTCCAATGGCAGCATGGGGTGTCCCGGTCTCGTAGGTCATTTACGCGGATCCTTCTTGTGAGTTGTTGCTCCCTTACTCTGTGCGATGATTATACCGAATTTTACTAGGAAAGGTAATGTCAGTAAAATCCTGGAGCAAGAGAAAAACACCCTGTAGATATTTCCATCCATATAAAAAAAATCCTCAAATAAAATAAAGGACTCTTCT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00491	4984	9599	-

Gene family

Gene family	subfamily
Transcription Factors Family	MYB-related

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006334 nucleosome assembly

cellular_component

GO:0000786 nucleosome

GO:0005634 nucleus

molecular_function

GO:0003677 DNA binding

GO:0003682 chromatin binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000491s00023692.1	PF00249.26	Myb_DNA-binding	5	55	4.20E-09
Glyur000491s00023692.1	PF00538.14	Linker_histone	123	178	1.50E-11

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	11.831
SRR1783600	control	11.830
SRR1783602	moderate drought stress	14.624
SRR1811619	moderate drought stress	14.229

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	19.338
DRR006520	Root Summer glycyrrhizin high producing strain	19.362
DRR006521	Root Winter glycyrrhizin high producing strain	13.040
DRR006522	Root Winter glycyrrhizin high producing strain	11.606
DRR006523	Root Summer glycyrrhizin low producing strain	13.711
DRR006524	Root Summer glycyrrhizin low producing strain	13.750
DRR006525	Leaf Summer glycyrrhizin high producing strain	9.287
DRR006526	Leaf Summer glycyrrhizin high producing strain	9.076

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	14.823
SRR2868004	Drought Stress (root)	13.879
SRR2967015	Control (root)	15.054

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.927
SRR9715740	Leaf	10.596
SRR9715741	Leaf	9.151
SRR9715739	Root	2.370
SRR9715742	Root	5.416
SRR9715743	Root	4.388

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	13.163
SRR8749028	MeJA induced 9h	12.801
SRR8749029	MeJA induced 9h	8.972
SRR8749030	Uninduced	14.195
SRR8749031	Uninduced	16.517
SRR8749032	Uninduced	13.110

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	18.304
SRR8400027	Control - Root	17.258