Gene detail

Gene detail information of Glyur000490s00023916

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G45010.1	4.00E-84	PLAC8 family protein
NR	KEH16478.1	1.23E-151	cell number regulator-like protein [Medicago truncatula]
Swissprot	tr\|B6SGC5\|CNR6_MAIZE	2.00E-105	Cell number regulator 6
trEMBL	tr\|A0A072THP7\|A0A072THP7_MEDTR	5.00E-152	Cell number regulator-like protein {ECO:0000313\|EMBL:KEH16478.1}

Sequence

Transcript Sequence

>Glyur000490s00023916.1
ATGTTGAATACTAGAATAGGCCACCGCGTACTCGTTTTTCTCTCTCACTCTCGCTGGTTTCCTCCTAAATTCCCGAGACCCAGATCTTTCGTCCAAACAACAACCCNGATGGAAGAAAGGAAGCAATCGTCGAGTTACGTGAAGCTGAGCAAAGACCAGACTACNCCTCTCGAAGACATTGTCCCCGGTGAACTCAACCAACCAATTGAGGTCCCTCAGTTGGCTGCACGGAAGTGCCCTGAATGTAGACAGCCTCTACCTGAAAGCTATGCACCTCCTGCTGATGAACCTTGGATGACTGGGATCTTTGGATGTGCAGAAGACCGTGAAAGCTTGACAGGACTGTTCTGTCCTTGTGTGTTATTTGGACGCAATGTAGAGAGCTTGAGGGAAGACACTCCCTGGACTACACCATGCATTTGTCATGCCATTTGTGTTGAAGGTGGCATTTCTCTGGCAATAGCAACTGTAGTTGCGACTTCCATCTTTCCTGGCATTGACCCGGGGACAACATGTCTCATTTGCGAGGGTTTATTTTTTACATGGTGGATGTGTGGCATTCACATGGGTCAAGTTCGGCAATCCTTGCAGAAGAAATATCACTTGAAGAATTCGCCATGCAATGCATGTTGTGTGCACTGCTGCTTGCACTGGTGTGCCTTGTGTCAGGAGCACAGGGAGATGAAGGGAAGGCTCTCAGACAACATTTTCTCAGAAATGACCATTGTAAACCCTCCTCCCATTCAAGAGATGAAGTCTTCTACTGAAGATAAGGAAAATAATCCTGAAACGTCTTCTGCTAACAACAATGAGCATATTACTCTGGAGATGCAGCCTATTTAAGCCATACCATTGTTAATACTTAATGGNGAAAAATGAAAAGATAGTATGCTTTTTTATTATTTTTTTATATATAGAGAATTTTTTCCCTTGGACCTTTTGTCTTGAGTTTGCATTAGACATGTAGGTCACATAGTATTATACATAGTAATTCATCATATCTGGTTTAGAGAGCCAAATTATACCGAATCCTCATTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00490	117360	120861	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000490s00023916.1	PF04749.12	PLAC8	98	228	3.70E-20
Glyur000490s00023916.2	PF04749.12	PLAC8	62	192	2.60E-20

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	14.722
SRR1783600	control	15.033
SRR1783602	moderate drought stress	10.899
SRR1811619	moderate drought stress	10.672

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	18.999
DRR006520	Root Summer glycyrrhizin high producing strain	18.384
DRR006521	Root Winter glycyrrhizin high producing strain	17.908
DRR006522	Root Winter glycyrrhizin high producing strain	16.836
DRR006523	Root Summer glycyrrhizin low producing strain	35.461
DRR006524	Root Summer glycyrrhizin low producing strain	35.751
DRR006525	Leaf Summer glycyrrhizin high producing strain	11.948
DRR006526	Leaf Summer glycyrrhizin high producing strain	11.532

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	25.506
SRR2868004	Drought Stress (root)	29.573
SRR2967015	Control (root)	24.690

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	38.192
SRR9715740	Leaf	27.646
SRR9715741	Leaf	39.057
SRR9715739	Root	24.266
SRR9715742	Root	28.212
SRR9715743	Root	26.963

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	95.275
SRR8749028	MeJA induced 9h	57.872
SRR8749029	MeJA induced 9h	92.770
SRR8749030	Uninduced	52.558
SRR8749031	Uninduced	56.425
SRR8749032	Uninduced	54.387

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	21.100
SRR8400027	Control - Root	27.498