Gene detail

Gene detail information of Glyur000490s00023911.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G07970.1	8.00E-92	Pectin lyase-like superfamily protein
NR	XP_003595746.1	0	Polygalacturonase [Medicago truncatula]
COG	YP_003391696.1	1.00E-21	glycoside hydrolase family 28 [Spirosoma linguale DSM 74]
Swissprot	tr\|P35336\|PGLR_ACTDE	4.00E-125	Polygalacturonase (Precursor)
trEMBL	tr\|G7IGR9\|G7IGR9_MEDTR	0	Polygalacturonase {ECO:0000313\|EMBL:AES65997.1}

Sequence

Transcript Sequence

>Glyur000490s00023911.1
ATGTCTCCACAAACTCCANTCATCATCATCTCACTTCTCATCCTCCTCACTTCATTAGTCTTATGTAATGCCTCTTATTGCATAGAGGAANCACTTCATCAAACAAATGCTGAAGCTGAATACTACTACCCTGTGCGTGATGGNAGGTTGATCAAAAGAAAACATCAACGTTTTGGTATCATGACAAGGGCCAATAGATACATCCATTTTTCTTCAGGAACGATCTATGGAACAATTGAAGCTTGGCCTCAAATGTCAGCATATGAAGAAGATAGACAACACTGGATTGTGTTTGATAGTGTCATGAATTTCAAAGTTGATGGTGGTGGCACATTCAATGGAAATGGGAAAAAATGGTGGCAAAACTCTTGCAAATCCAACACAAACCTTCCATGCAATGATGAACCAAGACCAAAAGCTGTGACTTTCTATCGTTGCAAGAATTTGAAAGTGAGAAATCTGAGGTTCAAAGATGCACAACAAATGCATGTAACCTTTCAGGAATGNTTCAATGTTATTGTTTCGAATCTCGTCGTCAGAGCACCAGGGGACAGTCCTAACACTGATGGAATTCATGTTGTAGAAACACAAAATATTGTCATAAGAAACAGTGACATTGGGACAGTTAGTGGGTCCCAAAATGTTCAAGCTACAGATATCACCTGTGGACCTGGACATGGAATCAGCATTGGAAGCTTAGGAGCTGGTAACTCAGAAGCTGAAGTCTCCAATGTGGTAGTGAATAGGGCCACCTTAATAGGAACAACTAATGGGGTGAGAATTAAGACTTGGCAGGTAAGAGTTGGTCTTGAGGGAGGTTCAGGTTATGCAAGAAACATCAAGTTTTTGAATATAGCAATGCAAAATGTGACCAACCCCATAATCATAGATCAAAACTATTGTGATCAANCAAAGCCATGCCAAGAGCAGGACTCAGCNGTGCAATTAAGCCATGTGTTGTACCAAAACATAAGAGGAACGAGTGCCTCAGAAGTGGCTATCAAATTTGACTGCAGCAGAACCGTCCCATGCAGAGAAATCTACCTGCAGGATGTGATTTTAGAACCACAAGGAAAGGGTGGTGGCACCACTGCTACATGTGAGAATGTTAGATATGTGAATAGAGGGAAGTTTTATCCTCAATGCTCTCCTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00490	82579	86058	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH28

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function
GO:0004650 polygalacturonase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000490s00023911.1	PF00295.12	Glyco_hydro_28	73	371	1.10E-91

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	15.134
SRR1783600	control	15.303
SRR1783602	moderate drought stress	10.964
SRR1811619	moderate drought stress	11.028

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.093
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.556
DRR006522	Root Winter glycyrrhizin high producing strain	0.390
DRR006523	Root Summer glycyrrhizin low producing strain	0.095
DRR006524	Root Summer glycyrrhizin low producing strain	0.080
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	39.048
SRR2868004	Drought Stress (root)	21.642
SRR2967015	Control (root)	20.751

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.002
SRR9715740	Leaf	9.066
SRR9715741	Leaf	0.079
SRR9715739	Root	1.903
SRR9715742	Root	5.673
SRR9715743	Root	4.563

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	49.653
SRR8749028	MeJA induced 9h	8.232
SRR8749029	MeJA induced 9h	5.895
SRR8749030	Uninduced	1.419
SRR8749031	Uninduced	0.300
SRR8749032	Uninduced	1.634

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	123.302
SRR8400027	Control - Root	98.104