Gene detail information of Glyur000490s00023903 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G21045.1 | 4.00E-51 | Rhodanese/Cell cycle control phosphatase superfamily protein |
| NR | KHN46455.1 | 5.24E-85 | Thiosulfate sulfurtransferase, chloroplastic [Glycine soja] |
| COG | YP_008147096.1 | 3.00E-18 | hypothetical protein SCE1572_03165 [Sorangium cellulosum So0157-2] |
| Swissprot | tr|Q8RUD6|STR19_ARATH | 5.00E-64 | Rhodanese-like domain-containing protein 19, mitochondrial (Precursor) |
| trEMBL | tr|I1LP77|I1LP77_SOYBN | 2.00E-85 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G02040.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00490 | 18953 | 20430 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000490s00023903.1 | PF00581.15 | Rhodanese | 18 | 116 | 1.50E-15 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.126 |
| SRR1783600 | control | 0.173 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.089 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 269.977 |
| SRR2868004 | Drought Stress (root) | 271.083 |
| SRR2967015 | Control (root) | 198.263 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.075 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.540 |
| SRR9715739 | Root | 0.480 |
| SRR9715742 | Root | 0.360 |
| SRR9715743 | Root | 0.148 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 12.946 |
| SRR8749028 | MeJA induced 9h | 65.569 |
| SRR8749029 | MeJA induced 9h | 38.216 |
| SRR8749030 | Uninduced | 8.547 |
| SRR8749031 | Uninduced | 39.328 |
| SRR8749032 | Uninduced | 13.729 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 98.938 |
| SRR8400027 | Control - Root | 57.417 |