Gene detail

Gene detail information of Glyur000489s00017501.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G63910.1	2.00E-159	farnesylcysteine lyase
NR	XP_004502965.1	0	PREDICTED: farnesylcysteine lyase-like isoform X1 [Cicer arietinum]
Swissprot	tr\|P57681\|PCYOX_ARATH	0	Farnesylcysteine lyase (Precursor)
trEMBL	tr\|I1KBM2\|I1KBM2_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA06G16230.1}

Sequence

Transcript Sequence

>Glyur000489s00017501.1
CACTCATTAAATATTAAATATCTATTTACAAGTAAATCGTTATTGATTTTACGGCAATAGATGGCAATAGAAGCAACGATCGAAGGCGGTGGCACATGATGATACTCCCTTTGTTGTTGACTTTTCTTGCGCTCTCCCAAGCTCAACCACACTCCGGTGCTCCACCGCCACCGCCGTCCACCGTCTGCATAATCGGCGCCGGCATCGGCGGCTCCTCCGTCGCCCATTTCCTCCGCAAATACTCGCCGGGGCTCACTCCCGCCCCGAAAATCCAAGTATTCGAGCGGAACAGCATCGTCGGGGGCCGCATAGCCACTGTCACCGTCGCGGGAGAAACCTTCGAAGCCGGAGCTTCCATTCTCCACCCAAAGAACCTTCACGCCGTCGAGTACACGAAGATTCTCAACCTCAAAGCCAAGCAGCCTAGTTCGGAATCCCTCTCTCTCGGCATTTGGGATGGCAACAAATTCGTTTTCAAAACCGTTAAGATTGATTCCAATCTTCCACTCATCGATAAGCTTCTCAAAATCCCGTTTATCCAAAATCTCGTTTCCCTCGTCAATTCGGGACTCGTGTTCCTTCGCTACGGCTTCTCCCTTTTGAAGATGCAGAGCTTTGTTGAGAGTATGGTGGATAGGTTCTTAAAGTACTACGAGGAACCTGGTTCGAGACCCATTTTCGAGACTGCGGATGACATGTTGAAATGGGCTGGTCTGTATAATCTTACTACCAGGACTTTACGAGATGAATTGGTCGACGCTGGGTTGTCTCCCTTGTTGATCAATGAACTTGTCACGGTCATCACACGTATCAATTATGGTCAGAGTGTCTACATGAGTGGGTTGGCAGGTGCAGTTTCTCTGGCAGGATCAGGTGGAGGATTGTGGTCTATTGACGGGGGCAACTGGCAAATGGCCGCTGGACTGATTAATCAGTCAAATGTTGCATTACACCTGCATGAAGAGATAAAATCTGTTGCTGACCTTGGAGATTATTACGAACTCAACTCAACAAAAGGAAACAGTTATACCTGTGGAGTTGCTGTGGTTGCCACACCATTGGATGAGTTGAATATTCAGTTCATTCCCACAATTTCAATTCCCGAGAGAAAATTACAGCACACGCATACAACTTTTGTCAGGGGCCTTCTAAACCCTGTATATTTTGGTCTCAAGGCTGCAACAAAAATTCCAGATCTCGTGGGCACATTAGAGGACCCTAAGCTTCCATTTTCATGCATTTCGGTTCTCAAGAAGCACAGCAAAAATGAATCCACTTATAAAATATTCTCTCGTCAACCAATGGCAGACACATTACTTGATAGCATTTTCAGTGTGAGGAAGGAGACAATTCGGATAAACTGGGGTGCCTACCCTCATTACCATGCCCCAGAAATATTTGCACCGTTTATATTGGACGGGCGACATCTGTACTACGTCAATGCATTTGAAAATGCAGCTAGCACCATGGAGACAAGTGCTGTGGCAGCTGAGAATATTGCCAGGCTCATACTTTCAAGATATTTTGGTAAAGGAATTGTGCATTCGTCTAATTTGAGTGCTAGTTCTCAAGGAGAGGGTGCTCATTTAGACTTGTGATACAGTGGTTGTAAGATAATAAGATATTGTTAGTTTGGGTGATGTTGATAGATTTTGTATAATTTGCATGAACACGGGAAAGGAANTAATTTGGAGAATTGTTTCATTTTTGTTCTGGATGGTCATCGATTTTAGATGTGTTGTTTTGTTTTTGGTAGATGAAGAAAAGAAACAAAGAAGATGTGTTAAATGAGTTTTAGAATTTCATTTTAACTTATAAATTCGTGTAACTCCAAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00489	151089	154380	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K05906	PCYOX1, FCLY	EC:1.8.3.5 1.8.3.6	Terpenoid backbone biosynthesis	map00900

Gene Ontology

biological_process

GO:0030328 prenylcysteine catabolic process

GO:0055114 oxidation-reduction process

molecular_function

GO:0001735 prenylcysteine oxidase activity

GO:0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000489s00017501.1	PF13450.1	NAD_binding_8	32	92	4.90E-12
Glyur000489s00017501.1	PF07156.9	Prenylcys_lyase	152	479	1.70E-111

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	21.992
SRR1783600	control	22.124
SRR1783602	moderate drought stress	23.936
SRR1811619	moderate drought stress	23.963

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	31.297
DRR006520	Root Summer glycyrrhizin high producing strain	31.072
DRR006521	Root Winter glycyrrhizin high producing strain	37.637
DRR006522	Root Winter glycyrrhizin high producing strain	36.704
DRR006523	Root Summer glycyrrhizin low producing strain	31.467
DRR006524	Root Summer glycyrrhizin low producing strain	31.727
DRR006525	Leaf Summer glycyrrhizin high producing strain	21.952
DRR006526	Leaf Summer glycyrrhizin high producing strain	21.664

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	41.477
SRR2868004	Drought Stress (root)	33.688
SRR2967015	Control (root)	45.811

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	28.049
SRR9715740	Leaf	25.915
SRR9715741	Leaf	38.420
SRR9715739	Root	17.299
SRR9715742	Root	23.919
SRR9715743	Root	21.397

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.168
SRR8749028	MeJA induced 9h	14.179
SRR8749029	MeJA induced 9h	7.601
SRR8749030	Uninduced	14.488
SRR8749031	Uninduced	7.679
SRR8749032	Uninduced	8.134

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	31.605
SRR8400027	Control - Root	29.757