Gene detail

Gene detail information of Glyur000489s00017498.2

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G63920.1	0	topoisomerase 3alpha
NR	XP_004502963.1	0	PREDICTED: DNA topoisomerase 3-alpha-like [Cicer arietinum]
COG	YP_003542001.1	4.00E-80	DNA topoisomerase [Methanohalophilus mahii DSM 5219]
Swissprot	tr\|C7J0A2\|TOP3A_ORYSJ	0	DNA topoisomerase 3-alpha
trEMBL	tr\|V7AVV0\|V7AVV0_PHAVU	0	DNA topoisomerase {ECO:0000256\|RuleBase:RU000518}

Sequence

Transcript Sequence

>Glyur000489s00017498.2
AAGGAGGGCATTGGTACAGATGCCACAATGCATGATCACATCAAGAAGCTGCTTGATCGATTCTATGCTACTAAGGATGCTAGCACTCGTTTCAAACCAACTAATTTGGGTGAGGCACTTGTTATGGGATATGATGACATGGGGTATAAACTATGGAAACCATATCTTAGAGCAGTTATGGAACGCGACATGAAATCAGTCAGTGAAGGGAATAAAAGCAGAGCTGAAGTTTTGGCAACTAGCTTGCAACAGATGAAAGATTGTTTCCTAGATGCAAGATTGAATAAAGTGAAACTTTTAGAAGCCATGGCTATATTTTTCGAAAGATCTAATAGATCTGGCGGTGATGAGATGAATGCAACTGGAGAAGTTGTTCGACGATGTGGGCTTTGCCAAGAATCAGACATGGTGCTAAGGAAAAATCGAGATGGCAATTTTATGGTTGGATGCCTAGGTTACCCTCAGTGTCGGAATGCTGTCTGGCTCCCTGGATCAGTATCAGAAGCAGTTGTGACCACCAATACTTGCAATTTTTGCACTCCTGGTCCCGTTTACCTGATTCAATTCAAGTTTCGGCAGCTGGAAATACCACCAAACTACAATGTCAACCATTTGGGCTGCATCGGTGGCTGTGACGAGATTCTTACACAGTTGACAGAAATATGTGGCACTGGCCCTCGCATGTCAGCAAGAGCTCGTGGACCAACTGCATCAAACAGCAACACCCATCATNCTAACCCAAGGCAAACAGTTTGTACGAACTGTCAAGAAACAGGGCATTCTTCTAATGATTGTCCTTCACAGACTTTACGCTCCAGAAATGCCCGACATCATGGAATGAACCAACATAATGGGGAAGCTTCTGTTTCATGCAGTTCGTGTGGAACACCATGTGTTCTGCGAACTGCAAATACTGCAAATAACAGGGGAAGGAAGTTCTACTCATGTCAATCACAGGAGTGCAACTTCTTTGTATGGGAGGATAGTCTCAATAATGGCACTGGAGGAAGAAGTTTTACACGTTCAAATAGTATTCCAGCATCCAACCCTAACCGAAATGGTGGCCGTGGAACTCGTGGTAGAGGTGGCCGGAATGGATCTCGGTCTTCTAATGGGACTTTTGTTTCAGCCACNGGGGATCCTATTTCTGGTAGAAGGTGCTTTGTGTGTGGTGATCCATCTCACTTTGCTAACGTCTGCCCCAATCGTGGAGTCTGATGTCTCTTGATGATACTTATCCATCCGTATAGAAGAAAACTAGGTGGGGTCATTCAGAACCTTTCTTTCTATTATGCATGTGTTTTGGAAGCACTTGTAAAGTGATTATGTCAAATATTTTAGCATGTATTACAACAACTTGTACTGGTTCTACGCCAATGCTAACTTCTGATGTTTNTCTTTATTCATTCATCACATCTTTGGCATAAAGGAACTTACAGAATTTGCTTATTCAAAATTAAAAAATCATTTAAGAGTCATTTTCAATCAGATCTTCTTTGGGTAGGGAGAAGATATAATCGCGGAACGCCATGACTTGTGGAATACCTGTGTTCCCTGGAAGCAATTTGACAGGGTTTGTGATGTAACAGAGGGCATTGGGACCTTTCGATTCCTGTCAAATTGTCAATGATCTTTCATCGGTAGGTTATGTGTAAAATGTCACTGTGAGCCTTTGTTGAAGACGGTTGAAATAGGATAATATCT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00489	120079	134015	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K03165	TOP3	EC:5.99.1.2	Homologous recombination	map03440
			Homologous recombination	map03440
			Fanconi anemia pathway	map03460
			Fanconi anemia pathway	map03460

Gene Ontology

biological_process
GO:0006265 DNA topological change

cellular_component
GO:0005694 chromosome

molecular_function

GO:0003676 nucleic acid binding

GO:0003677 DNA binding

GO:0003916 DNA topoisomerase activity

GO:0003917 DNA topoisomerase type I activity

GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000489s00017498.2	PF01131.15	Topoisom_bac	1	69	1.30E-09
Glyur000489s00017498.2	PF01396.14	zf-C4_Topoisom	117	154	7.70E-08
Glyur000489s00017498.2	PF00098.18	zf-CCHC	242	258	0.0002
Glyur000489s00017498.2	PF06839.7	zf-GRF	280	320	9.00E-12

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.522
SRR1783600	control	9.476
SRR1783602	moderate drought stress	9.560
SRR1811619	moderate drought stress	9.491

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.939
DRR006520	Root Summer glycyrrhizin high producing strain	8.305
DRR006521	Root Winter glycyrrhizin high producing strain	8.362
DRR006522	Root Winter glycyrrhizin high producing strain	6.996
DRR006523	Root Summer glycyrrhizin low producing strain	5.023
DRR006524	Root Summer glycyrrhizin low producing strain	4.600
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.099
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.138

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	13.095
SRR2868004	Drought Stress (root)	13.306
SRR2967015	Control (root)	15.194

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.771
SRR9715740	Leaf	3.221
SRR9715741	Leaf	3.584
SRR9715739	Root	3.470
SRR9715742	Root	7.032
SRR9715743	Root	6.437

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.235
SRR8749028	MeJA induced 9h	7.644
SRR8749029	MeJA induced 9h	3.814
SRR8749030	Uninduced	2.988
SRR8749031	Uninduced	1.771
SRR8749032	Uninduced	2.295

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	17.539
SRR8400027	Control - Root	17.070