Gene detail

Gene detail information of Glyur000489s00017492

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G51810.1	8.00E-110	gibberellin 20 oxidase 2
NR	KHN09624.1	0	Gibberellin 20 oxidase 3 [Glycine soja]
COG	YP_003277280.1	1.00E-30	2OG-Fe(II) oxygenase [Comamonas testosteroni CNB-2]
Swissprot	tr\|Q39111\|GAOX2_ARATH	6.00E-137	Gibberellin 20 oxidase 2
trEMBL	tr\|I1JY04\|I1JY04_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA04G38850.1}

Sequence

Transcript Sequence

>Glyur000489s00017492.1
CCTTCAACGTGTTATATGCAAAATTATGCCTCCCCTAATGGACTCAAACTGCGCTTCTAGTACTCTAGTACTATACCCTGCATCATCAAAGCCAGAGGAGCCAAAAGGGAATAATAATGGGGTATTTGTTTTTGACTCAAATTTGATACAAAAGCAAGGGGCCATAATGCCCAAAGAGTTCGTTTGGCCATCAGGGGATTTAGTTAACACCACACAAGAGGAGTTAAAGGAACCCCTCATAGACTTAGGCATCATGAAAGGGTGTGATGAGGGAGCAATTGCTAGTGCTGCAGAGCTTGTGAGGAAGGCATGTTTGAAACATGGCTTCTTTCAAGTGATAAACCATGGGGTGGACCAAGATCTCATACATGCTGCTTACCATGAATTTGACTCCATTTTCAAGCTCCCAATCAACAAGAAGCTAAGTGCCAAGAGGCAACCCGGTGGAGTCTCTGGTTACTCTGGTGCTCATGCGGATCGATACTCCTCCAAGTTGCCATGGAAAGAGACATTCTCTTTCATGTACCATCACAACCACCACCACCAGAGAAACNACAATTCCTCCAACTCCCAAGTTGTTGACTACTTCAACTCTGTCTTGGGAGAAGACCTTCAACACACAGGGTGGGTGTATCAAAAGTACTGTGAAGCAATGAAGGAGTTATCTTTAGTAATTATGGAGCTCTTGGCCATTAGTTTGGGGGTGGATCGTTTGTATTACCGAAGATTCTTCCAAGATGGTGACTCAATAATGAGGTGCAACTATTATCCACCATGCAACAGTTCCAGCCTCACCCTTGGCACTGGCCCTCACACGGACCCAACCTCACTAACCATTCTTCACCAAGACCAAGTTGGAGGTCTACAAGTTTTTGCAGATAACAAATGGGTGGCTGTTCGCCCCAGACCTGAAGCCTTGGTCGTAAACATTGGTGACACTTTCATGGCGCTGTCAAATGGGGGATACAAGAGTTGCCTACACAGGGCATTGGTGAACACATACAGGGAGAGAAGGTCACTGGTATTCTTTGTGTGTCCAAGAGAAGACAAGGTGGTGAGACCCCCAGAGAATCTGTTAACCAAAAATGAGCCAAGAAAGTACCCTGATTTCACTTGGTCCAATCTCTTTGAATTCACACAGAAACACTACAGGGCTGATGTTGCTACCCTCCAAAGCTTCTTTCAGTGGCGTTGCTCTTCCAATTCCAACACATCCTCCAACTTCTAGTTCTCCCCATGATAAGATTATTGCTATTTGTTTAATGTCTCTGTTTCCTTCTGCATATTAATTCTGTCAATTGATACCAGCAGATTATTTTACTGNCTATGATTATTAATTCCGTGTATACTAGCTAGCAAGCTAGTGTCATGTATTGTACTCTCTGTTTTGAGTACCCTGCAAACTAGATTGTGGTTGAAAATCGATTTTCTGTTGTGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00489	62020	65444	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0005506 iron ion binding

GO:0016491 oxidoreductase activity

GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000489s00017492.1	PF14226.1	DIOX_N	70	175	2.30E-22
Glyur000489s00017492.1	PF03171.15	2OG-FeII_Oxy	241	338	1.40E-28

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.362
SRR1783600	control	7.372
SRR1783602	moderate drought stress	8.370
SRR1811619	moderate drought stress	8.389

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	54.438
DRR006520	Root Summer glycyrrhizin high producing strain	53.564
DRR006521	Root Winter glycyrrhizin high producing strain	0.075
DRR006522	Root Winter glycyrrhizin high producing strain	0.076
DRR006523	Root Summer glycyrrhizin low producing strain	30.582
DRR006524	Root Summer glycyrrhizin low producing strain	30.941
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.065
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.124

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.175
SRR2868004	Drought Stress (root)	0.206
SRR2967015	Control (root)	0.832

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.776
SRR9715740	Leaf	0.132
SRR9715741	Leaf	0.179
SRR9715739	Root	3.436
SRR9715742	Root	12.320
SRR9715743	Root	8.560

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.049
SRR8749028	MeJA induced 9h	0.140
SRR8749029	MeJA induced 9h	0.042
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.239
SRR8749032	Uninduced	0.356

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.908
SRR8400027	Control - Root	17.695