Gene detail information of Glyur000489s00017483 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G21090.1 | 4.00E-106 | Pentatricopeptide repeat (PPR-like) superfamily protein |
| NR | XP_006581772.1 | 0 | PREDICTED: pentatricopeptide repeat-containing protein At2g21090-like [Glycine max] |
| Swissprot | tr|Q9SKQ4|PP167_ARATH | 3.00E-124 | Pentatricopeptide repeat-containing protein At2g21090 |
| trEMBL | tr|I1KBK6|I1KBK6_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G16030.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00489 | 33374 | 35107 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000489s00017483.1 | PF01535.15 | PPR | 69 | 97 | 8.80E-06 |
| Glyur000489s00017483.1 | PF01535.15 | PPR | 99 | 128 | 2.20E-07 |
| Glyur000489s00017483.1 | PF13812.1 | PPR_3 | 176 | 203 | 0.021 |
| Glyur000489s00017483.1 | PF13041.1 | PPR_2 | 232 | 280 | 4.20E-11 |
| Glyur000489s00017483.1 | PF01535.15 | PPR | 310 | 334 | 0.00072 |
| Glyur000489s00017483.1 | PF13041.1 | PPR_2 | 339 | 387 | 6.10E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.686 |
| SRR1783600 | control | 0.748 |
| SRR1783602 | moderate drought stress | 0.863 |
| SRR1811619 | moderate drought stress | 1.107 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.611 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.533 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.494 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.553 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.500 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.525 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.483 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.481 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.813 |
| SRR2868004 | Drought Stress (root) | 0.744 |
| SRR2967015 | Control (root) | 1.023 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.033 |
| SRR9715740 | Leaf | 0.572 |
| SRR9715741 | Leaf | 0.818 |
| SRR9715739 | Root | 0.889 |
| SRR9715742 | Root | 2.064 |
| SRR9715743 | Root | 1.418 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.061 |
| SRR8749028 | MeJA induced 9h | 6.178 |
| SRR8749029 | MeJA induced 9h | 7.672 |
| SRR8749030 | Uninduced | 4.081 |
| SRR8749031 | Uninduced | 4.559 |
| SRR8749032 | Uninduced | 3.323 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.923 |
| SRR8400027 | Control - Root | 1.041 |