Gene detail information of Glyur000489s00017482 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G13600.1 | 0 | Pentatricopeptide repeat (PPR) superfamily protein |
| NR | XP_003602631.1 | 0 | Pentatricopeptide repeat-containing protein [Medicago truncatula] |
| Swissprot | tr|Q9SIT7|PP151_ARATH | 0 | Pentatricopeptide repeat-containing protein At2g13600 |
| trEMBL | tr|G7JC33|G7JC33_MEDTR | 0 | PPR containing plant-like protein {ECO:0000313|EMBL:AES72882.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00489 | 31080 | 33197 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000489s00017482.1 | PF01535.15 | PPR | 58 | 84 | 0.00054 |
| Glyur000489s00017482.1 | PF01535.15 | PPR | 86 | 109 | 0.0028 |
| Glyur000489s00017482.1 | PF13041.1 | PPR_2 | 114 | 162 | 1.40E-08 |
| Glyur000489s00017482.1 | PF13041.1 | PPR_2 | 216 | 263 | 2.00E-09 |
| Glyur000489s00017482.1 | PF01535.15 | PPR | 292 | 316 | 0.012 |
| Glyur000489s00017482.1 | PF13041.1 | PPR_2 | 349 | 396 | 7.80E-11 |
| Glyur000489s00017482.1 | PF01535.15 | PPR | 430 | 455 | 0.00093 |
| Glyur000489s00017482.1 | PF01535.15 | PPR | 458 | 483 | 3.70E-05 |
| Glyur000489s00017482.1 | PF01535.15 | PPR | 498 | 521 | 0.37 |
| Glyur000489s00017482.1 | PF01535.15 | PPR | 530 | 554 | 0.045 |
| Glyur000489s00017482.1 | PF13812.1 | PPR_3 | 597 | 625 | 0.49 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.534 |
| SRR1783600 | control | 0.553 |
| SRR1783602 | moderate drought stress | 0.792 |
| SRR1811619 | moderate drought stress | 0.763 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.813 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.744 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.750 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.771 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.813 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.002 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.571 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.560 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.150 |
| SRR2868004 | Drought Stress (root) | 1.004 |
| SRR2967015 | Control (root) | 0.958 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.294 |
| SRR9715740 | Leaf | 1.087 |
| SRR9715741 | Leaf | 1.870 |
| SRR9715739 | Root | 1.427 |
| SRR9715742 | Root | 3.204 |
| SRR9715743 | Root | 3.470 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.332 |
| SRR8749028 | MeJA induced 9h | 4.225 |
| SRR8749029 | MeJA induced 9h | 1.468 |
| SRR8749030 | Uninduced | 4.345 |
| SRR8749031 | Uninduced | 2.302 |
| SRR8749032 | Uninduced | 1.524 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.148 |
| SRR8400027 | Control - Root | 1.409 |