Gene detail

Gene detail information of Glyur000489s00017476.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G09300.1	0	Thiamin diphosphate-binding fold (THDP-binding) superfamily protein
NR	XP_003602628.1	0	2-oxoisovalerate dehydrogenase subunit alpha [Medicago truncatula]
COG	YP_434851.1	1.00E-127	2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component subunit alpha [Hahella chejuensis KCTC 2396]
Swissprot	tr\|Q84JL2\|ODBA2_ARATH	0	2-oxoisovalerate dehydrogenase subunit alpha 2, mitochondrial (Precursor)
trEMBL	tr\|G7JBL9\|G7JBL9_MEDTR	0	2-oxoisovalerate dehydrogenase E1 component, alpha subunit {ECO:0000313\|EMBL:AES72879.1}

Sequence

Transcript Sequence

>Glyur000489s00017476.1
GCCGCCCACTAAAATGATCGCATGAAGACTCTGTCCCCAACACGAGGACTATACTTTCCTGCTTGCTATGNACAAAATCCAAAAAGCAACCAACAGTGTTGCTGCCATGTACTACTGTTGTTCAGGCTTGGCTCAACTACTTGGGTTGGGGGGTAGGAATAGGAATTAATTGATATTGGCCCAATTTAGCGTTGGAATGACGTGGCATTTTCATCCTATCTTGTAGTTGTTGTCCCTTAGCAATCCGCAACGCGCGAGCGAGAAAGAGAGGCAAGACAAAGACAAAGACAAGACAAGATTCACTCCCAAGAAGAAGAACCCCAATAATCAATCAATCGCTCTATCTCCGTCATTTTTTTCATTTCTTAATCTTTCTTTGTGTTCGGCACGGGCATCGTGAGCATGATGAGGAAATCGACCACCACCATCTTCACCCATTTCAAATCTAAGCTGAACTTGTCGTCTCCCATTCATCCAAATCCAACCTCCTTGATTTATCGGAACCCTAATCTCAGCAATGCAACACTGCCCCTTCTTCTCCCTTCACGCCGCTTTGCCTCCACTTCCAATCCCACTCACGATCAGGTCATGGATTTTCCTGGAGGAAAAGTGAAATTCATCCCTGAAATGAGATTTATATCTGAATCACTTCAAGAGAGAATACCTTGCTACCGTGTTCTTGATGACAATGGGCAGCCAATTTTGGGCGATAACTTTGTGCAGGTCAGTGAGGAAGTTGCTGTTAAAATGTATAATGACATGGTTGCACTCCAAACTATGGACACTATCTTTTATGAGGCACAAAGGCAAGGTAGAATATCATTTTATGTAACAACAAACGGAGAAGAGGCAATCAATATTGCATCAGCTGCAGCTCTTTCCATGGATGATNTTATTTTCCCTCAGTATAGGGAACAGGGAGTCTTGTTATGGCGTGGTTTCACTCTGCAAGAATTTGCAAATCAGTGCTTTTCCAATAAATTTGATAATGGGAAAGGAAGGCAGATGCCGGCCCATTATGGGTCCAACANGCACAATTACATTACTGTAGCATCNACTGTTGCTACGCAAATTCCCCATGCTGTTGGAGCTGCATATTCCTTAAAGATGGACAAAAAGGATGCATGTGCTGTCACTTACTTTGGAGATGGTGGCTCAAGTGAGGGAGATTTTCATGCCGGGTTAAATTTTGCAGCAGTTATGGAGGCCCCTGTTATTTTTATATGCCGGAATAATGGATGGGCTATCAGTACCCCGACATCAGATCAGTTTCGAAGTGATGGCATTGTCGTGAAAGGACAGGCATATGGAGTTCGTAGCATTCGTGTAGATGGCAACGATGTCCTGGCCATTTACAGTGCTGTTCAAGCTGCTCGTCAAATGGCAGTTCTTGAAGAGAGACCAGTTCTAATAGAAGCTCTTACATATAGAGTGGGACACCACTCCACATCAGATGACTCTACCAAGTATCGTCCAGCGAATGAGATTGAACGGTGGAGATTGGCACGTGATCCTGTGGCTAGATTTAGAAAGTGGATTGAAAGGAATGGTTGGTGGAATGATATGGCTGAGTCTGAGCTTAGGAATAGTTTGAGACATCAGCTTCTACAGACAATTCATGTTGCTGAGAGTGCAGAAAAACCTCCACTTTCAGACATTTTTAGTGATGTGTATGATGTTCCTCCTTCCAATCTCCGTGAACAGGAGCAATGGCTGAAGGAAACTGTAAAAAAACATCCACAAGAGTACCCAGCAAATATTTCCGTGTAGTTTTAGCCTCAATACTCAATATCTTGATTACAATTGCTTATTTTAATAAAAAAAATTGTCATCAAACTTGGTTGCTTGTGCAAACTTCGATCTTTATTCTGCATTTTAATCGGGTGCTTGTAGTTATGGGAACTTGAGCAGTTCCCCATGAAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00489	17480	22997	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00166	BCKDHA, bkdA1	EC:1.2.4.4	Propanoate metabolism	map00640
			Propanoate metabolism	map00640
			Propanoate metabolism	map00640
			Valine, leucine and isoleucine degradation	map00280
			Valine, leucine and isoleucine degradation	map00280
			Valine, leucine and isoleucine degradation	map00280

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function
GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000489s00017476.1	PF00676.15	E1_dh	120	415	4.00E-92

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.658
SRR1783600	control	3.319
SRR1783602	moderate drought stress	3.462
SRR1811619	moderate drought stress	3.417

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.254
DRR006520	Root Summer glycyrrhizin high producing strain	4.003
DRR006521	Root Winter glycyrrhizin high producing strain	3.532
DRR006522	Root Winter glycyrrhizin high producing strain	3.291
DRR006523	Root Summer glycyrrhizin low producing strain	4.693
DRR006524	Root Summer glycyrrhizin low producing strain	4.446
DRR006525	Leaf Summer glycyrrhizin high producing strain	11.611
DRR006526	Leaf Summer glycyrrhizin high producing strain	11.491

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.532
SRR2868004	Drought Stress (root)	7.166
SRR2967015	Control (root)	8.388

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.139
SRR9715740	Leaf	6.939
SRR9715741	Leaf	8.722
SRR9715739	Root	0.626
SRR9715742	Root	1.532
SRR9715743	Root	1.554

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.681
SRR8749028	MeJA induced 9h	6.944
SRR8749029	MeJA induced 9h	3.851
SRR8749030	Uninduced	7.966
SRR8749031	Uninduced	8.181
SRR8749032	Uninduced	6.933

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.452
SRR8400027	Control - Root	6.108