Gene detail

Gene detail information of Glyur000489s00017474

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G19380.1	2.00E-38	plant U-box 25
NR	XP_003526867.1	0	PREDICTED: U-box domain-containing protein 25-like isoform X1 [Glycine max]
COG	YP_001957951.1	1.00E-10	hypothetical protein Aasi_0851 [Candidatus Amoebophilus asiaticus 5a2]
Swissprot	tr\|Q9LT79\|PUB25_ARATH	4.00E-46	U-box domain-containing protein 25
trEMBL	tr\|I1KBK0\|I1KBK0_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA06G15960.1}

Sequence

Transcript Sequence

>Glyur000489s00017474.1
ATGAACGAAGCTCAAACTGAGATTATCATTCCTCACTTGTTCAGATGCCCAATAAGCCTAGACTTGTTGGAAGATCCAGTGACTTTGTGCACAGGCCAAACCTATGACAGGTCAAGCATAGAGAAATGGCTTTCTGCAGGTAACTTCACATGCCCTGTAACAATGCAGAAGCTTCATGATCTATCCATTGTTCCCAATAACACTCTACGGCATTTGATTGATCAGTGGCTTCAATTGGGTCCCCAATTTGATGACACTGGTAACTCTGCCACTATTGATTATCTAGCTTCACTAAAGCACACCCTTGAATCTCAAGAAGCCACCTTGGAAAGCAAGCTCCAAGCACTTGACAAAATTAGAGTCCTTTCTGATGAGTATTGTTCTTTCAAGAAATCTTGCTTCCACCAATTGAGTTTTTTGCCTCTACTTTTGGAACTGGTTTTTGGAAGTTCATTAGATGCTCAATTAGTCACAAAAAATCACCACATGGAGTTTGTGGAGTTAACACTTTCTTGCATTCTGAAATTGTTGCCACTTGTCAATTTGGACCCTCTAAACATGATCAAAGATGAGTCCAAGTTAGAAATGTTCCTTCTATTGTTTGAAAAGGGAACTAGCTCGGTTAAGACGAGTTTGTGTCATCTTATAGATTCAATTTCAACAGCAGCATCAATAACAGAAGAGGTATGTCACATGCTTGGGAATTCTCAAAAACTAGTTCGTGAAATTGTTCTAGTTATTGGCCAAAATTGTGAGGTTTCTATGGCTGCAATCAGAGCCATGTCAGCATTATGCTCCTTACAATCCAACAGAGAGAGTTTAGTGAAAGCAGGAGCAATAGATGGGATCATAGCATACATTTCAGGTTGTGAAACGAGACAGAAGAACTTGGCTCCACTTGCAATGGAAACAATGAAGAAGCTTTTGGTGCTAGAGAATGCTAAAGAGGCATTGGTGAATCACCCAAACGGGGTTGAGACTTTGGTGAAGATGGTTTTCAGGGTTTGTAATCAAGAGTGCAGTGAGAGTGCTGTTGGGGTGCTTTCAATTATTTGTCGTGATTTTGGGCGTGCAAGAGAGGAAGCCATTGGTGCTGGTGTTTTGACTCAGTTGCTGTTTCTTCTGCAGAGTCAGTGTGGCACCAAGACTAAAACAAAGGCCAGAATGTTGCTCAAGTTGCTGAGATCCAAGTGGATCGAGGAACCAAAGCAGGTGTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00489	4564	5781	-

Gene family

Gene family	subfamily
Ubiquitin Family	U_box

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0016567 protein ubiquitination

molecular_function

GO:0004842 ubiquitin-protein transferase activity

GO:0005488 binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000489s00017474.1	PF04564.10	U-box	10	78	1.20E-18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.542
SRR1783600	control	1.561
SRR1783602	moderate drought stress	1.776
SRR1811619	moderate drought stress	1.797

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.191
DRR006520	Root Summer glycyrrhizin high producing strain	3.014
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	3.176
DRR006524	Root Summer glycyrrhizin low producing strain	3.312
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.611
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.609

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.676
SRR2868004	Drought Stress (root)	6.488
SRR2967015	Control (root)	6.866

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.377
SRR9715740	Leaf	0.070
SRR9715741	Leaf	0.097
SRR9715739	Root	0.827
SRR9715742	Root	0.596
SRR9715743	Root	0.480

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	39.149
SRR8749028	MeJA induced 9h	34.032
SRR8749029	MeJA induced 9h	9.871
SRR8749030	Uninduced	17.048
SRR8749031	Uninduced	5.538
SRR8749032	Uninduced	5.186

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.302
SRR8400027	Control - Root	6.216