Gene detail

Gene detail information of Glyur000487s00025935.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT3G03450.1	RGA-like 2
NR	XP_007163387.1	hypothetical protein PHAVU_001G230500g [Phaseolus vulgaris]
Swissprot	tr\|Q8S4W7\|GAI1_VITVI	DELLA protein GAI1
trEMBL	tr\|V7D2D1\|V7D2D1_PHAVU	Uncharacterized protein {ECO:0000313\|EMBL:ESW35381.1}

Sequence

Transcript Sequence

>Glyur000487s00025935.1
ATGAAGACGAAGAGAGATCACCAAGAGAGCTGTGGTGGAGGAAGTGGTTGTAGCTACGGCGGCGGTGTGAAAGGTGAATGCTCGTCAATGCAGAACGGAAAGGCGAAGGTGTGGGAAGAAGAACAACACGGCGGCTCCGGCGGCGGAGGAATGGACGAGCTTCTGGCGGCGCTTGGGTACAAGGTGCGTTCCTCCGACATGGCTGACGTGGCACAGAAGCTTGAGCAGCTTGAGATGGTGATGGGTAGTGCCCAGGAGGATGGAATTAACCACCTTGCTTCCGATACAGTACACTACGACCCAACGGATCTCTATTCATGGGTTCAAACCATGCTCACTGAACTCAACCCAACCCAAACCAACACCACCCTCGACCCATGTTCACTCTTAGACAACCCCCAAATCAACGACCCTCTAGAACCTTCTTCCATCCTCAACAACACGTCGTCGCCTGTGTTCAACGACGACTCCGAATACGACCTCAGAGCAATCCCCGGCATCGCTGCGTTCCCACAAGACAACAACGAAACCGAACCCAACAACAGCAAGAGGTTGAAAACGACAACAACCTGGGGGAACGAACTTGATTCCACCCTCGCTCCGGCGCCGTTGCCGGTGCCGGAGTCGACTCGACCGGTGGTCCTCGTTGACTCTCAGGAAACCGGTGTTCGACTAGTCCACACGCTTATGGCGTGTGCGGAAGCNGTTCAGCAAGAGAATCTCAAGCTCGCTGACACGCTGGTGAAACACATAGGTCTTCTCGCTTCGTCACAAGCCGGAGCCATGAGGAAAGTCGCTTCCTACTTCGCACAAGCACTCGCGAGGAGAATCTACGGAATCTTCCCTGAAGANACATTGGATTCATCTTTCTCCGATGTTCTTCACATGCACTTCTACGAATCCTGTCCCTATCTCAAATTCGCACACTTCACCGCAAATCAAGCTATTCTCGAAGCATTTGCAACCGCAGGGAGAGTCCACGTCATCGATTTCGGGTTAAAACAGGGGATGCAGTGGCCGGCGCTGATGCAGGCACTTGCATTGCGTCCCGGCGGTCCACCCACTTTCCGGTTAACCGGAATCGGACCGCCACAGAACGACAACACCGACGCGCTTCAACAGGTTGGTTGGAAGCTTGCACAGCTGGCACAGAGAATTGGTGTTCAGTTCGAGTTTCGCGGGTTTGTCTGCAACAGCCTCGCGGATCTCGACCCGAATATGCTCGAGATCCGACCCGGTGAAGCCGTTGCCGTTAACTCCGTCTTCGAGCTTCACCGCATGCTTGCACGACCCGGATCCGTTGACAGGGTACTCAACACCGTTAAGAAGATTAAGCCTAAGATTGTTACCATNGTGGAGCAGGAAGCGAATCACAACGGGCCGGTTTTCTTGGACCGGTTCACTGAGGCGCTGCATTATTACTCGAGTCTTTTTGACTCGCTGGAGGGGTCTAATTCTTCTCCTTCGAATTCTTCTTCTTCTGATTCGTTGCCTTCGACCGGGTCGGGAACGCCGAATCAGGATCTGCTTATGTCGGAGCTTTACCTTGGGAGACAGATNTGCAACGTGGTGGCTTATGAAGGGGTGGACCGGGTCGAGCGACACGAGACGCTGAGCCAGTGGAGGGCGAGGATGGGTTCGGCCGGGTTTGACCCGGTTCACCTCGGTTCTAACGCGTTCAAGCAAGCGAGTATGCTTTTGGCTCTTTTCGCCGGCGGGGATGGGTATAGGGTGGAGGAGAGTAATGGGTGCCTCATGCTTGGTTGGCACACGAGGCCACTCATCGCCACCTCGGCTTGGAAGCTTCCACCCGGTGAGTCTTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00487	137961	139784	-

Gene family

Gene family	subfamily
Transcription Factors Family	GRAS

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0005634 nucleus

molecular_function
GO:0000989 transcription factor activity, transcription factor binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000487s00025935.1	PF12041.3	DELLA	52	121	4.10E-37
Glyur000487s00025935.1	PF03514.9	GRAS	225	601	9.70E-137

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	31.416
SRR1783600	control	31.877
SRR1783602	moderate drought stress	45.544
SRR1811619	moderate drought stress	45.637

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	65.053
DRR006520	Root Summer glycyrrhizin high producing strain	65.603
DRR006521	Root Winter glycyrrhizin high producing strain	40.895
DRR006522	Root Winter glycyrrhizin high producing strain	38.908
DRR006523	Root Summer glycyrrhizin low producing strain	62.166
DRR006524	Root Summer glycyrrhizin low producing strain	60.351
DRR006525	Leaf Summer glycyrrhizin high producing strain	77.136
DRR006526	Leaf Summer glycyrrhizin high producing strain	75.581

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	60.954
SRR2868004	Drought Stress (root)	55.164
SRR2967015	Control (root)	68.098

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	55.985
SRR9715740	Leaf	39.475
SRR9715741	Leaf	52.486
SRR9715739	Root	67.430
SRR9715742	Root	103.916
SRR9715743	Root	97.084

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	42.385
SRR8749028	MeJA induced 9h	28.450
SRR8749029	MeJA induced 9h	23.956
SRR8749030	Uninduced	32.393
SRR8749031	Uninduced	4.331
SRR8749032	Uninduced	7.188

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	39.660
SRR8400027	Control - Root	58.995