Gene detail

Gene detail information of Glyur000487s00025926

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G39790.1	3.00E-80	5'-AMP-activated protein kinase-related
NR	KEH34618.1	2.23E-176	5'-AMP-activated kinase-like protein, putative [Medicago truncatula]
COG	YP_002430996.1	8.00E-06	glycoside hydrolase family protein [Desulfatibacillum alkenivorans AK-01]
trEMBL	tr\|A0A072UZP8\|A0A072UZP8_MEDTR	8.00E-177	5'-AMP-activated kinase-like protein, putative {ECO:0000313\|EMBL:KEH34618.1}

Sequence

Transcript Sequence

>Glyur000487s00025926.1
CCTAATGTTCCTCTTTCTCTTCTCTTTGACAGGGGAAGTGAAAACCTCTTCATGATGGAAATAAGTATTGCAAGGTGTCATCTTGAAGCAAAGGGGATATTCATTTCCAATATTTCGAGAACAATAGGAAGGGAAAATACTCATAAACTTCCATGTAATGTGGCGTCCCCGAATTTAAGGTGGGACTTTCACAGATTAGCCTCTCCAAATCAAACTTTTACTGCAGTGTCTCCAAGAAGGCCATTTTTCTCTAGAACACATTCTGTGCTGACAAGTTTAGAGGAATCTGCATCATTAGAATCTGGAGATAATTCTAGTGAGGATGTGGATCCATCTACAGAATCAGAAGAGGAGACCTTGGCACAACCACTTACCAGTGAACAGATTAAGGCACTGCTTGCTGATACTGAAAGAGGGAAACTCACTAAGAAGCTTAGTGAAGCCAACCAACAAAATCGGTTCCTCAAAAGACAGTTGTATATAAAGGAGGATGCTTTGGTAAAATTTAAAAGTGAACTTGCTGTCATGGAGCTTGAAGTTCAGACTTTGGCCAGACTAGCAGAAGAAATAGCTCAATCTGGTATTCCAGCTGGTTCAAGGAAAATCAATGGAAAGTACATTCATTCTCACCTTGTTGCTAGATTAGAAGCTGTGCATGAAAAATTGGAGGAACAAATAAAGGGCGTTGACGCGGCACAATCGAAGGAGGTCTCTGTGTTTTGGGTTGGCATGGCTGAGAGTGTGCAAGTTATGGGAACCTTTGATGGTTGGAGCCAGGGAGAGCACCTTTCACCTGAGTATACTGGTTCTTACACAAGGTTCTCAACAACATTGCTGCTCAGGCCTGGAAGGTATGAAATCAAATTCTTAGTAGNTGGTGATTGGAAGCTATCACCAGAGTTCCCCGTTACTGGTGAAGGGTTAACGAAAAATAATTTGTTAATTGTTGAGTGAGTGATCTGTGTATTTAATCCTAGCAACACTTTATATACATG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00487	46515	51844	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--	--

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	54.144
SRR1783600	control	54.408
SRR1783602	moderate drought stress	41.694
SRR1811619	moderate drought stress	40.563

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	31.234
DRR006520	Root Summer glycyrrhizin high producing strain	32.200
DRR006521	Root Winter glycyrrhizin high producing strain	16.383
DRR006522	Root Winter glycyrrhizin high producing strain	16.427
DRR006523	Root Summer glycyrrhizin low producing strain	20.217
DRR006524	Root Summer glycyrrhizin low producing strain	20.225
DRR006525	Leaf Summer glycyrrhizin high producing strain	16.819
DRR006526	Leaf Summer glycyrrhizin high producing strain	15.616

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	50.975
SRR2868004	Drought Stress (root)	52.950
SRR2967015	Control (root)	35.258

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	112.403
SRR9715740	Leaf	95.023
SRR9715741	Leaf	88.014
SRR9715739	Root	24.139
SRR9715742	Root	26.591
SRR9715743	Root	27.643

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	17.417
SRR8749028	MeJA induced 9h	11.096
SRR8749029	MeJA induced 9h	14.507
SRR8749030	Uninduced	16.159
SRR8749031	Uninduced	6.935
SRR8749032	Uninduced	6.639

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	90.772
SRR8400027	Control - Root	86.633