Gene detail information of Glyur000487s00025921 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G01995.1 | 2.00E-78 | |
| NR | KHN08627.1 | 9.15E-160 | hypothetical protein glysoja_024536 [Glycine soja] |
| Swissprot | tr|Q7XA78|D27_ARATH | 7.00E-36 | Beta-carotene isomerase D27, chloroplastic (Precursor) |
| trEMBL | tr|C6TMB0|C6TMB0_SOYBN | 1.00E-159 | Putative uncharacterized protein {ECO:0000313|EMBL:ACU24052.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00487 | 29019 | 31279 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000487s00025921.1 | PF13225.1 | DUF4033 | 149 | 232 | 9.40E-37 |
| Glyur000487s00025921.2 | PF13225.1 | DUF4033 | 169 | 205 | 7.80E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 13.449 |
| SRR1783600 | control | 13.399 |
| SRR1783602 | moderate drought stress | 12.126 |
| SRR1811619 | moderate drought stress | 12.284 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 16.130 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 15.848 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 13.196 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 12.838 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 15.054 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 14.961 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 25.379 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 25.042 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 17.680 |
| SRR2868004 | Drought Stress (root) | 20.212 |
| SRR2967015 | Control (root) | 18.058 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 27.308 |
| SRR9715740 | Leaf | 54.555 |
| SRR9715741 | Leaf | 28.505 |
| SRR9715739 | Root | 11.913 |
| SRR9715742 | Root | 10.492 |
| SRR9715743 | Root | 11.021 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.139 |
| SRR8749028 | MeJA induced 9h | 2.547 |
| SRR8749029 | MeJA induced 9h | 2.179 |
| SRR8749030 | Uninduced | 0.874 |
| SRR8749031 | Uninduced | 0.337 |
| SRR8749032 | Uninduced | 1.019 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 26.832 |
| SRR8400027 | Control - Root | 29.972 |