Gene detail

Gene detail information of Glyur000487s00025916

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G02560.1	2.00E-127	nuclear encoded CLP protease 5
NR	XP_006574428.1	0	PREDICTED: uncharacterized protein LOC100798621 isoform X1 [Glycine max]
COG	YP_001869446.1	5.00E-84	ATP-dependent Clp protease proteolytic subunit ClpP [Nostoc punctiforme PCC 73102]
Swissprot	tr\|Q9S834\|CLPP5_ARATH	1.00E-167	ATP-dependent Clp protease proteolytic subunit 5, chloroplastic (Precursor)
trEMBL	tr\|I1JBF6\|I1JBF6_SOYBN	0	ATP-dependent Clp protease proteolytic subunit {ECO:0000256\|RuleBase:RU003567}

Sequence

Transcript Sequence

>Glyur000487s00025916.1
GTGATTTATAGGAAATTAAGGAAATGGGTAGAAAAGAGAAAGACTACTCAAAAANCTCTAGTGAAAGCGGTGTATGATGATGAATTTTGGACACCCGAGAGAAGTTCACGTTGGGGTACTTGGTCCATAAGGAATGATTTGCAAGTCCCTTCTTCCCCTTATTTCCCTGCCTATGCACAAGGACAAGGGCCACCCCCCATGGTGCAGGAGCGTTTCCAGAGTGTTATAAGTCAGCTTTTCCAATATAGGATAATCCGTTGTGGTGGAGCAGTTGATGATGATATGGCAAACATCATAGTTGCTCAGCTCCTTTACCTTGATGCTGTTGATCCAAACAAGGATATTATCATGTATGTCAATTCTCCAGGAGGATCGGTTACAGCTGGTATGGCAATATTTGATACAATGAGGCATATTAGACCTGATGTGTCNACTGTTTGTGTTGGATTAGCGGCTAGTATGGGAGCTTTTCTGCTTAGCGCAGGGACCAAAGGAAAAAGATACGCATTGCCAAATTCAAGGATAATGATTCATCAACCGCTTGGTGGTTTTCAAGGAGGGCAATCTGACATAGATATTCAGGCAAATGAAATGCTGCATCACAAGGCAAACCTGAATGGATATCTCTCGTATCACACTGGCCAAAGTTTAGAGAAAATTAACCAGGATACAGACCGTGATTTTTTCATGAGTGCAAAAGAAGCCAAAGAATATGGACTCATAGATGGTGTCATTATGAACCCTCTCAAAGCTCTTCAGCCTTTGGNGGCTGCAGCAGAGGGTAAAGATCGGGCTAGTGTTTGAACTTGAGACTATTGCACTCTAATTTCCGTGGCATAAAAAACAGGGTGTTANACAAAAATGTTTTTTGGTTGCATAGTCCAGCTGAACTTTTCACAGATGTTGATATTTCTATAACCGTGTACCAAAAAAGGAGGTCAAAATGATACTTCTTATGTGTTGTCTCAAAGAATTTATACNGATAGAAGCTTCCTTAATGGATCCTGGATGTGCTTTTTTCCTTCTATTGTGATAACATAACTGATATGTCCTCGTAGGGAACGTATCAGGTGAGAACTCTTGTTTATTATGAGAAATGAGAACTATCTATAATAGCCCTTGGATGAAAATTAATGGTAAAGATTAAAAAGCCCAATTACGCAATCACATGACCCCTCCGTGTTCTCTCTCCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00487	14354	16971	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01358	clpP, CLPP	EC:3.4.21.92	Cell cycle - Caulobacter	map04112
			Longevity regulating pathway - worm	map04212

Gene Ontology

biological_process
GO:0006508 proteolysis

molecular_function
GO:0004252 serine-type endopeptidase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000487s00025916.1	PF00574.18	CLP_protease	70	247	9.80E-78

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	29.766
SRR1783600	control	29.675
SRR1783602	moderate drought stress	8.547
SRR1811619	moderate drought stress	8.718

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	16.343
DRR006520	Root Summer glycyrrhizin high producing strain	15.999
DRR006521	Root Winter glycyrrhizin high producing strain	12.426
DRR006522	Root Winter glycyrrhizin high producing strain	11.958
DRR006523	Root Summer glycyrrhizin low producing strain	18.200
DRR006524	Root Summer glycyrrhizin low producing strain	18.484
DRR006525	Leaf Summer glycyrrhizin high producing strain	46.757
DRR006526	Leaf Summer glycyrrhizin high producing strain	46.903

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	18.344
SRR2868004	Drought Stress (root)	16.756
SRR2967015	Control (root)	15.723

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	25.370
SRR9715740	Leaf	39.537
SRR9715741	Leaf	21.985
SRR9715739	Root	4.456
SRR9715742	Root	5.259
SRR9715743	Root	5.093

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	17.464
SRR8749028	MeJA induced 9h	12.554
SRR8749029	MeJA induced 9h	10.686
SRR8749030	Uninduced	5.345
SRR8749031	Uninduced	3.240
SRR8749032	Uninduced	3.952

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	13.363
SRR8400027	Control - Root	12.248