Gene detail information of Glyur000486s00021139 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G11950.2 | 2.00E-66 | Putative lysine decarboxylase family protein |
| NR | KHM99206.1 | 2.61E-110 | Putative cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL6 [Glycine soja] |
| COG | YP_003685251.1 | 4.00E-57 | hypothetical protein [Meiothermus silvanus DSM 9946] |
| Swissprot | tr|Q8LR50|LOGL1_ORYSJ | 6.00E-92 | Probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL1 |
| trEMBL | tr|I1L9R4|I1L9R4_SOYBN | 5.00E-110 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA10G11490.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00486 | 141350 | 143743 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000486s00021139.1 | PF03641.9 | Lysine_decarbox | 62 | 192 | 3.90E-44 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.409 |
| SRR1783600 | control | 0.477 |
| SRR1783602 | moderate drought stress | 0.160 |
| SRR1811619 | moderate drought stress | 0.163 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.935 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.832 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.536 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.628 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.778 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.694 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 37.818 |
| SRR2868004 | Drought Stress (root) | 44.053 |
| SRR2967015 | Control (root) | 44.544 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.193 |
| SRR9715740 | Leaf | 1.152 |
| SRR9715741 | Leaf | 0.664 |
| SRR9715739 | Root | 0.707 |
| SRR9715742 | Root | 0.891 |
| SRR9715743 | Root | 2.658 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.518 |
| SRR8749028 | MeJA induced 9h | 3.044 |
| SRR8749029 | MeJA induced 9h | 12.537 |
| SRR8749030 | Uninduced | 0.391 |
| SRR8749031 | Uninduced | 0.598 |
| SRR8749032 | Uninduced | 1.060 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 8.934 |
| SRR8400027 | Control - Root | 6.465 |