Gene detail

Gene detail information of Glyur000486s00021138

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G60830.1	3.00E-151	actin-related protein 7
NR	NP_001241387.1	0	uncharacterized protein LOC100813266 [Glycine max]
COG	YP_003266114.1	2.00E-26	actin/actin family protein [Haliangium ochraceum DSM 14365]
Swissprot	tr\|Q8L4Y5\|ARP7_ARATH	0	Actin-related protein 7
trEMBL	tr\|C6TF22\|C6TF22_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA12G01010.1}

Sequence

Transcript Sequence

>Glyur000486s00021138.1
CAAATTCGGGTTATATTTACCAATTCCCGATAAAAATAGGGACACCCGCTGAGCGGCGCTAACTTGGGTCGAGTCGAATGAGGTGTATGTCGTGCTGAGTAACAAAACGAGTGACTGAGAAGTGACTGGGAAGAGTTTGTGTTGTGTTGTGTTATTTGTAAAGNGAAAGGAAAGATTATAGGGTTTTAGTTTTAGGGTTGAAGGAAGAAGAAGATGGAAGCGGCAGTGGTTGACGTCGGTTCTAAGCTCCTCAAAGCCGGTTTTGCCATTCCTGATCAGACCCCCGCCATGATAATTCCAACTCAGATGAAACAACTGCTTGATGACGGGTCAATGACCGATGATTCGCCGGTTGATAGTGTCACCGTTGATCCGGTTGTGCGGGGATTTATAAGAGATTGGGATGCCGTGGAGGATTTGTTGCACCATGCCAACAAGGAACAGTTGGTGCAACTAATGTTTGAAACATTCAACATATCGGGGTTTTATGCCTCAGAACAAGCAGTGTTATCACTGTATGCTGTGGGGCGTATCTCAGGGTGCACTGTTGATATTGGACATGGAAAAATAGATATTGCGCCTGTGATTGAGGGTGCTGTTCACCACATTGCCTCAAGAAGATTTGAGTTTGGAGGTATTGATCTAACTAATTTCCTGGCTCAAGAACTTGGCAAATCCAATCCACTAGTAAATATCAGCATGTCTGACGTGGAGAAAATAAAAGAGCAATACTCATGCTGTGCTGAAGATGACTTAGCATATGAGAAGACCCAGTATTCTTGTCCTGTGGAGAAACATACCCTTCCTGATGGACAGGAGATAACAATTGGGAGAGAAAGATACACAGTTGGTGAAGCTTTATTCCAGCCAAGTCTGTTGGGTTTAGAAGCTCATGGCATTGTTGAGCAGCTTGTCCGAACTATTTCAACCGTATCATCTGATAATCATCGGCAGCTCCTGGAAAATACTGTGGTTTGTGGTGGCACTTCTTCTATGACCGGTTTTGAAGAGAGATTTCAGAAGGAATGTAGCTTAAGTTCATCAGCGGTTCAACCTACCCTAGTTAAGCCTCCAGAATACATGCCAGAAAATTTAACCAATTATTCTGCATGGGTGGGAGGTGCCATACTTGCCAAAGTAGTTTTCCCTCAAAATCAGCATATAACTAAGGCAGACTACGATGAAACCGGACCTTCCATAGTCCACCGGAAATGCTTCTGACCGGATTCGTCTGCACGATTTCAAGAATCATTTATTCCTCTACTTCTACTTGTGCTGCAAATGCTAGATAGATGTCCATATGCTTCTATGATTTTAAAAGCTGCAGTGATCTCCANTAATGCAATCATCTTACTCTGCACGAGTACAAAATCACATGTACATGTATGTTGAAGCACTAGGAGCTTGTTTATAATGTGAATATTCCCTGTAAGATAGTATTGATGATCCTTCTTACAATGATGCCAGTTCCTATCTGTCCTTTAATTGGTTTTTATAGCCTTTTGTAAAAGTGAAATC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00486	114035	121091	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006325 chromatin organization

GO:0032502 developmental process

cellular_component
GO:0005634 nucleus

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000486s00021138.1	PF00022.14	Actin	73	335	1.10E-56

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	12.865
SRR1783600	control	12.936
SRR1783602	moderate drought stress	10.945
SRR1811619	moderate drought stress	11.238

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	15.826
DRR006520	Root Summer glycyrrhizin high producing strain	15.761
DRR006521	Root Winter glycyrrhizin high producing strain	11.119
DRR006522	Root Winter glycyrrhizin high producing strain	10.989
DRR006523	Root Summer glycyrrhizin low producing strain	18.791
DRR006524	Root Summer glycyrrhizin low producing strain	18.967
DRR006525	Leaf Summer glycyrrhizin high producing strain	11.660
DRR006526	Leaf Summer glycyrrhizin high producing strain	11.718

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	23.550
SRR2868004	Drought Stress (root)	30.547
SRR2967015	Control (root)	30.495

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	19.839
SRR9715740	Leaf	28.872
SRR9715741	Leaf	22.628
SRR9715739	Root	11.656
SRR9715742	Root	15.517
SRR9715743	Root	16.102

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	38.586
SRR8749028	MeJA induced 9h	15.967
SRR8749029	MeJA induced 9h	23.098
SRR8749030	Uninduced	7.467
SRR8749031	Uninduced	5.860
SRR8749032	Uninduced	5.920

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	25.412
SRR8400027	Control - Root	25.371