Gene detail information of Glyur000486s00021136 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G51400.1 | 6.00E-10 | Photosystem II 5 kD protein |
| NR | NP_001235677.1 | 2.67E-42 | uncharacterized protein LOC100527666 [Glycine max] |
| Swissprot | tr|P31336|PST2_GOSHI | 1.00E-33 | Photosystem II 5 kDa protein, chloroplastic (Precursor) |
| trEMBL | tr|I1MJQ4|I1MJQ4_SOYBN | 3.00E-43 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA15G43100.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00486 | 103935 | 104237 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.315 |
| SRR1783600 | control | 1.199 |
| SRR1783602 | moderate drought stress | 1.026 |
| SRR1811619 | moderate drought stress | 1.124 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.535 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.861 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.684 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.436 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.967 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 9.458 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2876.348 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2958.936 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 52.106 |
| SRR2868004 | Drought Stress (root) | 50.651 |
| SRR2967015 | Control (root) | 29.009 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 817.913 |
| SRR9715740 | Leaf | 809.057 |
| SRR9715741 | Leaf | 618.070 |
| SRR9715739 | Root | 4.003 |
| SRR9715742 | Root | 5.579 |
| SRR9715743 | Root | 4.195 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 67.248 |
| SRR8749028 | MeJA induced 9h | 14.174 |
| SRR8749029 | MeJA induced 9h | 23.977 |
| SRR8749030 | Uninduced | 26.121 |
| SRR8749031 | Uninduced | 4.298 |
| SRR8749032 | Uninduced | 21.183 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 20.220 |
| SRR8400027 | Control - Root | 22.293 |