Gene detail information of Glyur000486s00021135 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G63510.1 | 3.00E-174 | FMN-linked oxidoreductases superfamily protein |
| NR | XP_004506326.1 | 0 | PREDICTED: tRNA-dihydrouridine synthase A-like isoform X2 [Cicer arietinum] |
| COG | YP_008489168.1 | 4.00E-81 | tRNA-dihydrouridine synthase A [Listonella anguillarum M3] |
| trEMBL | tr|I3SNH2|I3SNH2_LOTJA | 0 | Uncharacterized protein {ECO:0000313|EMBL:AFK41814.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00486 | 98750 | 103237 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000486s00021135.1 | PF01207.12 | Dus | 68 | 373 | 4.00E-61 |
| Glyur000486s00021135.2 | PF01207.12 | Dus | 68 | 308 | 1.30E-56 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.843 |
| SRR1783600 | control | 2.562 |
| SRR1783602 | moderate drought stress | 2.303 |
| SRR1811619 | moderate drought stress | 2.361 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.736 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.751 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.429 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.296 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.513 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.435 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 11.898 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 11.803 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 6.518 |
| SRR2868004 | Drought Stress (root) | 6.616 |
| SRR2967015 | Control (root) | 7.300 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 16.801 |
| SRR9715740 | Leaf | 21.688 |
| SRR9715741 | Leaf | 13.216 |
| SRR9715739 | Root | 1.146 |
| SRR9715742 | Root | 2.072 |
| SRR9715743 | Root | 1.975 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.363 |
| SRR8749028 | MeJA induced 9h | 4.414 |
| SRR8749029 | MeJA induced 9h | 3.205 |
| SRR8749030 | Uninduced | 2.784 |
| SRR8749031 | Uninduced | 2.067 |
| SRR8749032 | Uninduced | 3.698 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 7.408 |
| SRR8400027 | Control - Root | 6.659 |