Gene detail

Gene detail information of Glyur000486s00021132.1

Functional Annotation

Database	Orthologs	E value	Annotation
NR	XP_006591977.1	0	PREDICTED: histone-lysine N-methyltransferase 2D-like isoform X1 [Glycine max]
trEMBL	tr\|I1LNW0\|I1LNW0_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA12G01030.1}

Sequence

Transcript Sequence

>Glyur000486s00021132.1
ATGGGGTTTGATAACGAGTGCATAGTCAACATTCAATCTCTTGCTGGAGAGTACTTCTGCCCCGTTTGTCGCCTGCTCGTCTTTCCAAACGAGGCTTTGCAGTCACAATGTACTCATTTGTACTGCAAGCCGTGTTTGACATACGTCGTGAGCACCACGAGGGCTTGTCCTTACGACGGTTACTTGGTGACCGAGGCGGATTCCAAGCCTTTGATAGAGTCAAATAAGACACTTGCTGAAACTATTGGAAAAATAGCAGTTCATTGCCTATATCACAGGAGTGGGTGCACATGGCAGGGAACTTTGTCNGAGTGTACATCTCATTGTTCTGGATGTGCTTTTGGCAATTCTCCTGTTGGTGTGCAGGGTCAGGTGCAACAGGCGGCTGGGACCCAGGATCCTTCAGCAACTAGTGCTATTGCATCTACTGATCAGAACCAGGCCGCTGCTCCAGTTGGAGGAACAGCTTCACAAGCTCTGACTTCTCAAACAGTTGCTGCAACTACTACACCTGGGCATGTTTCAAATCAGCCAACCAACCCAGCTTCTCAAACTCAAGCTTCAGTTCAAGCTGTTGNGCAGCCAACAGCAGAGCAATGGTATCAGCAGCAACAATATCAACAGTACTACCAGCAATACCCTGGACAAGATCCTTACCAACAGCAGTATCAACAGTACTACCCCTATCAACAGTCTGTAGTTCCACAATACCAGCAGGCCTATGGCCAGCCTCAGCAACAACCGCAACTGCAACCCCAGCCTCAGCAACAGCAACAATCCCAGCCTCAGCCACAGGCCCAACACCAACCGCAGCCTCAACTTCAAGCACAGCCTCAGGCACAAGGATTGTCTCAACCGCTTTCACATGTTCAGGCTCCTTTGGCCCCACAATCTCAGATGCAAGTTCACCAACAACCACAGCAGCTTCAGCCTGCTGTACAGCCACATGGTCAGATGAGTCACCCAAGTGGCCAGGGTCAAGCCTTCCCTCAACCTCAGCCTTATCCTTACCCCCAAGCTCAGCCTCATTCTGTCCAACCTCAACCCCAACAACATTTGCAAATCCCTCCTTATCAGCAGCCTCATCCTCAAACACAGCATTCACANCCTCAAATTCAACAACCAGTTCAGAAGTATCCTGTTCCTCAGCCTCAAGTACATCCACAAATGCAACCTAATGCTCCAGTTCAACATCTTCCTCAGCCTCAGATGCATCCTCACCAGCCCATGACTCCTAATGTACAGCCTCAAGTGCAAAGTGCATCGTCACATGCAGTGACTGGTCATCACTCTTATCCTCAAACTCTGCCTCATCAGAATTCNCAACCGGGAGCCCCTCAACATGCTGTGCACATGCATCCTCAAAGTGGGCCTCAACTCCAGGCCCAGCATTCTGTCCAGATGCAGAATCAGTTTCCTCACCAAAATCCAATGATGCGCCCAAATCAATCTCATGCTATGTTTCCTAATCAGCAACAGCCAGTTTTGTTACCTTCACCTGTTCAGGGTCAAACCACCCCTCCTCTGCAACAGCAGCTAGGATATAGTCATAATCAACAACCTGGACAAATCAACCAACGTCCTATTTTGCAACCAACTCAACAAATATTGCCTCAGCAACCATTTGCTCAACACCAGATGCCTATGCCATCTCATCTACGACCCCAAGGTCCAGCACATTCATTTCCCAANCATGCTTATCCACAGTCACAGGGGAATACTGCACTATCAAATAGCACTCAGCACAGTCAGTCTCAAAATGCTGTAGGAANACCTATTCTCAGTCATGCAGGACACGTACAACCTTTTGCACAATCTGCCAATACTATTCCTGCTAGACCAGGGCAAAATGGTGCTAGTTACCTGTCTGAAAATCAGAATTTGTTGGTTGGGACCAATAATCAAGTACAGTTGTCTACTGAATTGCAGTCTAGGGCACCAGAACCAATTGAAAGACAAGGTGATGTCAATGANAAACAAACTGACTCTGCCTCTGGGAAACTTGGTAAAATTTTTAAGGATTTGGACACAGTGTCTGGACCAGCAAATGAGTTGAAATCTGAAAAAGAAACAGATTTGAAATCAACTGAGGTTGGGAGTAAGCAAAGTAGTGAAGATNCACACTCTGTGAAGACTTTAGGCCCAAATGCGAATGCATTAGAAAATGGCGATTCAGTGAATAAGAATGTTGGCAAAGGAGAGGCTGCTGAAAATAATGAGCATGCTGTTGTCCAAGGCAATGATATTCAAGATGGACCTCCGCTGAAGATAGAGACAAAGCACTCTGGGTCAGAAACTGATAAACCGCATGGTGATGATACATGTACTCCAGGACCTCCTCCCGGTGCTGACAATCCAGTACCAGCTGTTTCTCAAACCAATGGTGGCCATGGACCTGGCATTGATGAATATAGAGGCATGCAGCCCAGGGGNTTAGCTCAGCCGTCTCATCCAGATTCTTTTACTGATCAGGGTAAGCATCAGCAACCAATGCTTAATTATAATCCTGCTGCCATCCAGCAGAGGTCTTCTGCAATGTTAGCATCACAATTGCCACATCCAGCAGTTCCAAATCAGCCACTCCCTTCCGGGAACTCTTCAACTCTTATCAGGAATCAGGGACCTGCCCCTGCTCTTCATTCAGGACAGNCCTTAAACTCAATGGAGAATTTTCAGCCAACCATGTTCAAGCAACCGCAGGGCTCTGACATCCAGTTTAATAATCCAGGGCGAAGCTTTCAACCTCAGTCTCTTGGACCCCTGGGGCCATATAACCAAGTTCATGAACCTCCTTTCCGTGGTGGAGCATCCAATTTGTCTCGTATTGGAGGACCACGATTTGGTGCACCACCTCCTGGAGATATGCATGGTGGAATGACAGCCAACTTGCCACCACATGCTCCTGAAGGTTTTGGTTTGCAGGATGAAAGGCTCAAATCTTTCCAGGTTCCTGGTCAACAAAATTTTGATCGAAGAGAATTTGAAGATGAACTCAAGAAATTCCCTAGGCATCCTTTGGANGCTGAGCCGGTTTCTAAGTTTGGAAATTATCCATTAGGTCCACATGAAGCTGGAAAGAGACCGGTTGGTTTTCATGATGATGTCATTAAGAAACCAGGTTCTACTCTTCATCCTGGTTATCTTGGACCAGGTCCTGGATATGGGAGACATCGTATGGATGGTATGGCTCCAAGAAGTCCTGTTAGTGAATTTGCTGAGATGCCTTCCCGGAGATTGGGCCCCCTCGCNGGTGGTCTTGTTAGTAAGTCAGGTATGGATGATTTTGATGGCAGGGCTGCAAGTCNTTTTGGTGAGTCAGTTGGCATTGCATTCCGTGACAGTCGGTTTCCTCATCCNCCTAGCCATTTGCATAGAGATGAGTTTGATGGTTTTGGTAATTTTCGAATGGGTGAACATCCAAGAAGTGGTGATTTCATTGGTCAAGACGAATTTGTTGGCCATTTTCAAAGGGGTGAACATTTGGGTCNGCATAATTTTCCTAGACATTTGCAGCTTGGGGAGCATATCGGTTTTGGTGCCCATCCTGGTCATATGCGAGCTGTTGAACTTCGTGGTTCTCGGAGTTTTGAATCTTTCAGCAAAGGCAACAGGCCAGCTCATCCGCAGCTTGGTGAGCCTGGGTTCAGGAGCAGCTTTTCCCTTGAAGGATTTCCTAATGATGCTGGATTTTTATCAGGAGATATCAGGTCTTTCGATAATATGAGGAGAAGGAAGGCTCCTAGCGTGGGGTGGTGCCGTTTATGTAAAGTTGACTGTGAAACAGTTGAAGGACTGGAATTGCATTCTCAAACAAGGGAGCACCAGAAGATGGCCATGGATATAGTTAAAACAATCAAACAAAATGCAAAGAAACAGAAATTTGAACAATCATCAGTAGAAGATGGACACAAGACACGGAGTACTGGTTTTGAGGGTCNTGGAAACAAGCATTGAGTGGTTGTGGGTTGCTGTAATTTTGATACGCTCTCATGCC

Protein Sequence

>Glyur000486s00021132.1
MGFDNECIVNIQSLAGEYFCPVCRLLVFPNEALQSQCTHLYCKPCLTYVVSTTRACPYDGYLVTEADSKPLIESNKTLAETIGKIAVHCLYHRSGCTWQGTLSECTSHCSGCAFGNSPVGVQGQVQQAAGTQDPSATSAIASTDQNQAAAPVGGTASQALTSQTVAATTTPGHVSNQPTNPASQTQASVQAVXQPTAEQWYQQQQYQQYYQQYPGQDPYQQQYQQYYPYQQSVVPQYQQAYGQPQQQPQLQPQPQQQQQSQPQPQAQHQPQPQLQAQPQAQGLSQPLSHVQAPLAPQSQMQVHQQPQQLQPAVQPHGQMSHPSGQGQAFPQPQPYPYPQAQPHSVQPQPQQHLQIPPYQQPHPQTQHSXPQIQQPVQKYPVPQPQVHPQMQPNAPVQHLPQPQMHPHQPMTPNVQPQVQSASSHAVTGHHSYPQTLPHQNSQPGAPQHAVHMHPQSGPQLQAQHSVQMQNQFPHQNPMMRPNQSHAMFPNQQQPVLLPSPVQGQTTPPLQQQLGYSHNQQPGQINQRPILQPTQQILPQQPFAQHQMPMPSHLRPQGPAHSFPXHAYPQSQGNTALSNSTQHSQSQNAVGXPILSHAGHVQPFAQSANTIPARPGQNGASYLSENQNLLVGTNNQVQLSTELQSRAPEPIERQGDVNXKQTDSASGKLGKIFKDLDTVSGPANELKSEKETDLKSTEVGSKQSSEDXHSVKTLGPNANALENGDSVNKNVGKGEAAENNEHAVVQGNDIQDGPPLKIETKHSGSETDKPHGDDTCTPGPPPGADNPVPAVSQTNGGHGPGIDEYRGMQPRGLAQPSHPDSFTDQGKHQQPMLNYNPAAIQQRSSAMLASQLPHPAVPNQPLPSGNSSTLIRNQGPAPALHSGQXLNSMENFQPTMFKQPQGSDIQFNNPGRSFQPQSLGPLGPYNQVHEPPFRGGASNLSRIGGPRFGAPPPGDMHGGMTANLPPHAPEGFGLQDERLKSFQVPGQQNFDRREFEDELKKFPRHPLXAEPVSKFGNYPLGPHEAGKRPVGFHDDVIKKPGSTLHPGYLGPGPGYGRHRMDGMAPRSPVSEFAEMPSRRLGPLAGGLVSKSGMDDFDGRAASXFGESVGIAFRDSRFPHPPSHLHRDEFDGFGNFRMGEHPRSGDFIGQDEFVGHFQRGEHLGXHNFPRHLQLGEHIGFGAHPGHMRAVELRGSRSFESFSKGNRPAHPQLGEPGFRSSFSLEGFPNDAGFLSGDIRSFDNMRRRKAPSVGWCRLCKVDCETVEGLELHSQTREHQKMAMDIVKTIKQNAKKQKFEQSSVEDGHKTRSTGFEGXGNKH

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00486	82535	87143	-

Gene family

Gene family	subfamily
Ubiquitin Family	RING

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005515 protein binding

GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--	--

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	19.068
SRR1783600	control	17.048
SRR1783602	moderate drought stress	27.311
SRR1811619	moderate drought stress	27.150

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	13.091
DRR006520	Root Summer glycyrrhizin high producing strain	13.106
DRR006521	Root Winter glycyrrhizin high producing strain	6.695
DRR006522	Root Winter glycyrrhizin high producing strain	6.633
DRR006523	Root Summer glycyrrhizin low producing strain	14.081
DRR006524	Root Summer glycyrrhizin low producing strain	14.148
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.498
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.534

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	20.253
SRR2868004	Drought Stress (root)	22.476
SRR2967015	Control (root)	25.535

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.908
SRR9715740	Leaf	8.697
SRR9715741	Leaf	8.646
SRR9715739	Root	8.117
SRR9715742	Root	24.149
SRR9715743	Root	19.446

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	17.479
SRR8749028	MeJA induced 9h	19.787
SRR8749029	MeJA induced 9h	11.737
SRR8749030	Uninduced	4.911
SRR8749031	Uninduced	5.379
SRR8749032	Uninduced	3.644

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	17.409
SRR8400027	Control - Root	16.817