Gene detail information of Glyur000486s00021125 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G52090.1 | 1.00E-56 | DNA-directed RNA polymerase, RBP11-like |
| NR | XP_007131395.1 | 1.89E-79 | hypothetical protein PHAVU_011G010100g [Phaseolus vulgaris] |
| COG | YP_001191926.1 | 7.00E-10 | DNA-directed RNA polymerase L [Metallosphaera sedula DSM 5348] |
| Swissprot | tr|Q38859|NRPBB_ARATH | 4.00E-72 | DNA-directed RNA polymerases II, IV and V subunit 11 |
| trEMBL | tr|V7AD36|V7AD36_PHAVU | 7.00E-80 | Uncharacterized protein {ECO:0000313|EMBL:ESW03389.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00486 | 46972 | 50416 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000486s00021125.1 | PF13656.1 | RNA_pol_L_2 | 29 | 105 | 9.40E-23 |
| Glyur000486s00021125.2 | PF13656.1 | RNA_pol_L_2 | 17 | 75 | 1.20E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 45.470 |
| SRR1783600 | control | 44.769 |
| SRR1783602 | moderate drought stress | 45.719 |
| SRR1811619 | moderate drought stress | 43.552 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 54.538 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 55.330 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 44.634 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 43.196 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 65.385 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 62.869 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 16.519 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 16.661 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 40.981 |
| SRR2868004 | Drought Stress (root) | 40.120 |
| SRR2967015 | Control (root) | 42.062 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 21.818 |
| SRR9715740 | Leaf | 22.898 |
| SRR9715741 | Leaf | 24.920 |
| SRR9715739 | Root | 30.908 |
| SRR9715742 | Root | 27.748 |
| SRR9715743 | Root | 25.753 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 200.704 |
| SRR8749028 | MeJA induced 9h | 59.090 |
| SRR8749029 | MeJA induced 9h | 177.227 |
| SRR8749030 | Uninduced | 30.831 |
| SRR8749031 | Uninduced | 32.177 |
| SRR8749032 | Uninduced | 51.002 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 43.474 |
| SRR8400027 | Control - Root | 38.986 |