Gene detail information of Glyur000486s00021120 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G21640.1 | 6.00E-130 | FKBP-type peptidyl-prolyl cis-trans isomerase family protein |
| NR | XP_004506318.1 | 0 | PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP42-like isoform X2 [Cicer arietinum] |
| COG | YP_007515240.1 | 1.00E-06 | peptidylprolyl isomerase [Bradyrhizobium oligotrophicum S58] |
| Swissprot | tr|Q9LDC0|FKB42_ARATH | 5.00E-162 | Peptidyl-prolyl cis-trans isomerase FKBP42 |
| trEMBL | tr|V7ADV4|V7ADV4_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW03425.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00486 | 19721 | 22872 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000486s00021120.1 | PF00254.23 | FKBP_C | 9 | 96 | 3.70E-13 |
| Glyur000486s00021120.1 | PF13414.1 | TPR_11 | 120 | 196 | 9.30E-10 |
| Glyur000486s00021120.1 | PF07719.12 | TPR_2 | 205 | 237 | 3.60E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 21.560 |
| SRR1783600 | control | 21.925 |
| SRR1783602 | moderate drought stress | 19.586 |
| SRR1811619 | moderate drought stress | 19.795 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 24.344 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 24.060 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 25.766 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 24.973 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 25.285 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 25.532 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 17.692 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 17.258 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 68.784 |
| SRR2868004 | Drought Stress (root) | 71.955 |
| SRR2967015 | Control (root) | 65.147 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 73.112 |
| SRR9715740 | Leaf | 67.865 |
| SRR9715741 | Leaf | 81.936 |
| SRR9715739 | Root | 4.713 |
| SRR9715742 | Root | 20.033 |
| SRR9715743 | Root | 14.594 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 59.540 |
| SRR8749028 | MeJA induced 9h | 59.283 |
| SRR8749029 | MeJA induced 9h | 58.746 |
| SRR8749030 | Uninduced | 66.977 |
| SRR8749031 | Uninduced | 88.577 |
| SRR8749032 | Uninduced | 64.432 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 66.362 |
| SRR8400027 | Control - Root | 59.328 |