Gene detail

Gene detail information of Glyur000485s00032216

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G73140.1	1.00E-161	Plant protein of unknown function (DUF828)
NR	XP_003525992.2	0	PREDICTED: protein YLS7-like [Glycine max]
Swissprot	tr\|Q1PFD9\|TBL31_ARATH	0	Protein trichome birefringence-like 31
trEMBL	tr\|I1KDM6\|I1KDM6_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA06G33980.1}

Sequence

Transcript Sequence

>Glyur000485s00032216.1
GAAAAAAGGACCTTCTTTGACACACGACATTTGAAAATGCCTAGAATCTTGGGAGTTTTCAATTCCTTCAACCATCCCATGTCAATGTTGTCTTTTAAGTCATTGATTGATCGCAGGATCCAATCACTCTTCCCAGTTGTATTGTATTCAATCCTAATCCTAGGATCTGCAAGGTTAGTCCTAGATAGCTTGAAGATCAGCAACCAGCATAGCCATGTTTCTAGGCTCTATGGTGGTGAAAGGAATAGATTATTACCAATTGTAGTGTTGCCAGAGGATCGTTTTGAGGAAGATTGCAATGTGTTTGAAGGGACATGGGTGTGGGACAATGTGTCATATCCTCTTTATGAAGAAGAGAGTTGCCCTTACTTGGTCAAGCAGACTACTTGTCAGAAGAATGGGAGACCTGATTCCTTCTACAAGAATTGGAAGTGGCAGCCTCATGGATGCAACCTCCCAAGATTTGACCCTTTGAAGTTGTTGCACATGTTGAGGGACAAGAGAATGATGTTTATTGGAGACTCATTACAAAGAGGCCAATTTGAGTCTATGGTCTGTTTGGTGCAATCTGTAATTCCTGAAGGAAAGAAATCCCTTCATAGAATTCCACCAATGAAGATCTTCAGAGCTGAGGAGTTCAATGCATCGATTGAATACTACTGGGCTCCATTCATAGTGGAATCCATTTCAGATCATGCAACAAATCATACAGTACATAGACGAATGGTAAGGCTTGACTCTATTGCTAACCATGGCAAACATTGGCAAGGAGTGGACATTTTGGTGTTTGAGAGTTATGTTTGGTGGATATATGGATCACCACACCATGTCCAAGAATATAATGTCACCACTGCATACAGGTTGGCATTGAAAACATGGGCGAATTGGTTAGAATCAAACATCAAACCCTTGACTCAAAAGGTCTTTTTCATGAGTATGTCTCCAACACATCTGAGCTGGGAATGGAAGCAAGGAAGTAATGAAAACTGTTTCAATGAGTCATACCCAATCCAAGGTCCATACTGGGGCACTGGCTCAAATCTTGAGATCATGAAGATATTACAGGATGCACTACAAGAACTGAAAATAGATGTCACCCTGTTGAACATCACACAGTTATCAGAGTACAGAAAAGATGCTCACGCGTCGGTTTACGGTGAGCGAAAGGGCAAGCTGCTGACAAAAGAACAGAGAGCAAACCCAAAATCTTTTGCTGATTGCATTCACTGGTGCTTACCTGGAGTCCCTGATGCATGGAATGAAATCCTCTATGCATATCTGTTGAAGAATTATCAAAACTTTTCTTGACACATGATGGCAAAGAACCATGACAGAGAGCACCAAGCACCTCTTAGATGGGGCTGGAGGGGCACATTCCTAATTTTTCATCCGCTTAAATAATTTTTTAGTCTCTGTAATATATACTTCATTGGATTTAAGTCCCTACAAAAATCTTGATCGGTTTTAATCCCTGAAAAATAAGAGTTTTTGGTTTAATATTTGGTCGATGTTGAATTTGTCTTTGTAATATGTGGACTATATTGCTTTTAGTCCCTAAAATATGACATCACTTTTATTTTACAATGACT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00485	144290	148075	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000485s00032216.1	PF14416.1	PMR5N	97	151	3.60E-21
Glyur000485s00032216.1	PF13839.1	PC-Esterase	152	428	3.50E-75

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.616
SRR1783600	control	0.699
SRR1783602	moderate drought stress	1.814
SRR1811619	moderate drought stress	1.648

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.390
DRR006520	Root Summer glycyrrhizin high producing strain	3.322
DRR006521	Root Winter glycyrrhizin high producing strain	2.158
DRR006522	Root Winter glycyrrhizin high producing strain	2.252
DRR006523	Root Summer glycyrrhizin low producing strain	1.844
DRR006524	Root Summer glycyrrhizin low producing strain	1.874
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.170
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.336

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.677
SRR2868004	Drought Stress (root)	1.763
SRR2967015	Control (root)	1.904

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.412
SRR9715740	Leaf	0.533
SRR9715741	Leaf	0.563
SRR9715739	Root	0.089
SRR9715742	Root	1.744
SRR9715743	Root	0.564

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.934
SRR8749028	MeJA induced 9h	0.718
SRR8749029	MeJA induced 9h	0.800
SRR8749030	Uninduced	0.763
SRR8749031	Uninduced	0.269
SRR8749032	Uninduced	0.529

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.400
SRR8400027	Control - Root	1.783