Gene detail information of Glyur000485s00032209 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G16280.1 | 7.00E-85 | RNA helicase 36 |
| NR | XP_003596088.1 | 8.21E-175 | DEAD-box ATP-dependent RNA helicase [Medicago truncatula] |
| COG | YP_003674078.1 | 3.00E-48 | DEAD/DEAH box helicase domain-containing protein [Methylotenera versatilis 301] |
| Swissprot | tr|Q9SA27|RH36_ARATH | 2.00E-124 | DEAD-box ATP-dependent RNA helicase 36 |
| trEMBL | tr|G7IQY0|G7IQY0_MEDTR | 3.00E-175 | DEAD-box ATP-dependent RNA helicase {ECO:0000313|EMBL:AES66339.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00485 | 39768 | 42497 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000485s00032209.1 | PF00270.24 | DEAD | 1 | 48 | 1.00E-08 |
| Glyur000485s00032209.1 | PF00271.26 | Helicase_C | 125 | 194 | 5.10E-24 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.738 |
| SRR1783600 | control | 7.183 |
| SRR1783602 | moderate drought stress | 9.478 |
| SRR1811619 | moderate drought stress | 8.600 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.954 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.550 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 10.208 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 10.462 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 9.893 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 12.223 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.433 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.320 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 9.431 |
| SRR2868004 | Drought Stress (root) | 7.284 |
| SRR2967015 | Control (root) | 9.938 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.631 |
| SRR9715740 | Leaf | 14.144 |
| SRR9715741 | Leaf | 6.064 |
| SRR9715739 | Root | 3.593 |
| SRR9715742 | Root | 5.532 |
| SRR9715743 | Root | 7.487 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 28.949 |
| SRR8749028 | MeJA induced 9h | 18.849 |
| SRR8749029 | MeJA induced 9h | 23.139 |
| SRR8749030 | Uninduced | 8.359 |
| SRR8749031 | Uninduced | 7.111 |
| SRR8749032 | Uninduced | 6.065 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 17.174 |
| SRR8400027 | Control - Root | 16.250 |