Gene detail

Gene detail information of Glyur000484s00024966.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G38260.1	3.00E-104	Protein kinase superfamily protein
NR	XP_003535924.2	0	PREDICTED: probable receptor-like protein kinase At1g67000-like [Glycine max]
COG	YP_001958461.1	3.00E-24	hypothetical protein Aasi_1443 [Candidatus Amoebophilus asiaticus 5a2]
Swissprot	tr\|Q9FID6\|Y5392_ARATH	2.00E-118	Probable receptor-like protein kinase At5g39020 (Precursor)
trEMBL	tr\|K7LIP9\|K7LIP9_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA10G20918.1}

Sequence

Transcript Sequence

>Glyur000484s00024966.1
CTCTGAAATAATTAAAAAGTAACACCAGCTTAATTGGGAGGGAAGGTCATGAATCACATGCTATGCGGATGATTCCAGCTCATGAGTTTTGCACTCTCTTGGTGCTGCTGCTGCTGCTGCTGCTTGTGGTCTCCAACACTGCGAAAGGGAACAAGTGTCCACCTTCGTTTGATTGTGGGAATCTTGGCAAGATCCATTTCCCATTCACTTCAGCAGAGCAACCCGAGTGTGGNTTGTTGGCGATACACGGTTGTGGTGACCCTTCCCCGGATGCAGTTAAAACCATCAAAAACAACGGAACATGGTTCTATGTTGTCNAACTCGACCAGTTCACTATGGTCATCAAAGATGACGACCTCCACTCCCTTTTGCTGTCCAAACGATGTGGGGTCTTCAGCAAAAACTACACCTTTGAAACCACTTCTCCTTTCTTCTCTCTTCACTACTTGAATGTCACCTTGTTCAGCTGCAACAGCACCCTCAATGTCACCCCANCCGCAATCGCAACGACCATTTCGAAATCCGCGATATGCCCTGAGGACATCTTCTATGATGCAGCTAATATGGAAGATGAGTATGTCAATTCCAATTACTACTATCAGTATTTTACAGCATGTTCAATGGTTCGGCTTCCAATCAGAGACAAAGGTCTCCAACCTGATCCGCAAGGAAACCTTTTTNATTTTGTCTCTGCTGAGATTCCCATCCAAATTCGCATATCTCCTGCTTGTTCTTCTTGTTACTATCTCAGAGGGGGCCAGTGTCAACTTGATAACCAAGGGAACTTCTTTTGTGCCCAAGAGAAAACTAGTGAAAAGGTGAAGATAGTTGTAGCAGTTTCTTCAGTTGCTGGAGCACTAGGAGTTTTGATGGTCTTGGCTTGCATCATACGAAGATATTATTACCACAAGGAAAACCCCACCTACCTAATGATTGAGAATTTTCTGAAGCAACATGGANACCTTTCGGCCAAAAGGTACAGTTATTTGGAGGTNAAGAANATGACCAACTCCTTNAGAAACAAATTAGGCCAAGGAGGGTATGGCAGTGTATACAAAGGGAGGTTGCAAAATGGAAGTCTCGTGGCAGTGAAAATTTTAAGTAAATTACAAGGTGACGGAGAAGAATTCATTAATGAAGTTGCTAGCATTAGCATGACTTCTCATGTTAACATTGTCAGTTTATTGGGCTTTTGTTTGGAAGGCTCTAAAAGAGTTCTCATCTATGAGTACATGNCTAATGGATCTCTTGAGAAGTTCATATATGAAGAGAGAGATCCCCNAAGGATTAATCTCACATTGAATTGCACAACTATGTACAATATTGCTATTGGTGTTGCTCGAGGACTGGAATATTTGCACAAGGGTTGCAACACTAAAATCTTGCATTTTGATATAAAACCTCACAACATACTCCTAGATGAGATGTTTTGCCCAAAAATATCTGATTTTGGGCTTGCTAAAATATGTCCAAGAGAAAAAAGCACNGTATCAATGATGGTTGCAAGGGGAACCATAGGATACATTGCTCCTGAGGTGTTCTGTAGAAATTTTGGTGGGGTGTCTCATAAATCAGATGTCTACAGTTACGGCATGATGGTTTTGGAAATGCTTGGCGCAAGAGAGAATATTAACGATAGAGTTGATTTTTCAAGTGAAAAATACTTTCCACATTGGATTTACAGCCACCTTGAATTAAATCAAGAGCTTCAATTACGGTGTATTAAAAAACAAAGTGATAAAGAAATGGTAAGAAAAATGACAATNGTGAGTTTGTGGTGCATACAAACAGACCCTTCTAACCGACCTGCAATGAGTAAAGTGGTGGAAATGATGGAAGGAAGCGTTACCTTACTGCAAGTGCCACCCAAACCTTTCGTTTCGTCATTGTCGACGTCTTCAATCCTTGAATCTCAAACAAGTGGGACTTCATAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00484	148911	151149	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.9.1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000484s00024966.1	PF00069.20	Pkinase	320	589	3.70E-46

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.170
SRR1783600	control	0.152
SRR1783602	moderate drought stress	0.020
SRR1811619	moderate drought stress	0.019

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.954
DRR006520	Root Summer glycyrrhizin high producing strain	0.930
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.279
DRR006524	Root Summer glycyrrhizin low producing strain	0.285
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.132
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.083

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.467
SRR2868004	Drought Stress (root)	1.454
SRR2967015	Control (root)	2.348

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	41.282
SRR9715740	Leaf	23.963
SRR9715741	Leaf	55.957
SRR9715739	Root	3.647
SRR9715742	Root	13.714
SRR9715743	Root	9.934

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.343
SRR8749028	MeJA induced 9h	2.238
SRR8749029	MeJA induced 9h	0.712
SRR8749030	Uninduced	20.920
SRR8749031	Uninduced	2.963
SRR8749032	Uninduced	2.556

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.021
SRR8400027	Control - Root	1.755