Gene detail information of Glyur000484s00024958 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G25690.2 | 8.00E-36 | Hydroxyproline-rich glycoprotein family protein |
| NR | XP_006582053.1 | 0 | PREDICTED: protein CHUP1, chloroplastic-like [Glycine max] |
| Swissprot | tr|Q9LI74|CHUP1_ARATH | 3.00E-50 | Protein CHUP1, chloroplastic |
| trEMBL | tr|K7KWC5|K7KWC5_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G23330.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00484 | 103621 | 106732 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.151 |
| SRR1783600 | control | 1.132 |
| SRR1783602 | moderate drought stress | 1.985 |
| SRR1811619 | moderate drought stress | 2.073 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.130 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.225 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.560 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.192 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.354 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.595 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 70.523 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 70.118 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.110 |
| SRR2868004 | Drought Stress (root) | 0.012 |
| SRR2967015 | Control (root) | 0.169 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 14.651 |
| SRR9715740 | Leaf | 25.760 |
| SRR9715741 | Leaf | 13.426 |
| SRR9715739 | Root | 0.025 |
| SRR9715742 | Root | 0.091 |
| SRR9715743 | Root | 0.030 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.024 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.032 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.892 |
| SRR8400027 | Control - Root | 2.248 |