Gene detail information of Glyur000484s00024952 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G66520.1 | 3.00E-99 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| NR | XP_004488535.1 | 0 | PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Cicer arietinum] |
| Swissprot | tr|Q9FJY7|PP449_ARATH | 8.00E-119 | Pentatricopeptide repeat-containing protein At5g66520 |
| trEMBL | tr|K7KWL4|K7KWL4_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G29686.1} (Fragment) |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00484 | 35449 | 37056 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000484s00024952.1 | PF01535.15 | PPR | 186 | 214 | 3.90E-09 |
| Glyur000484s00024952.1 | PF13041.1 | PPR_2 | 215 | 262 | 1.70E-07 |
| Glyur000484s00024952.1 | PF01535.15 | PPR | 291 | 311 | 0.24 |
| Glyur000484s00024952.1 | PF13041.1 | PPR_2 | 316 | 363 | 1.20E-07 |
| Glyur000484s00024952.1 | PF01535.15 | PPR | 392 | 415 | 0.018 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.297 |
| SRR1783600 | control | 2.933 |
| SRR1783602 | moderate drought stress | 3.028 |
| SRR1811619 | moderate drought stress | 3.109 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.576 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.499 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.554 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.486 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.131 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.940 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.652 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.634 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 2.642 |
| SRR2868004 | Drought Stress (root) | 2.388 |
| SRR2967015 | Control (root) | 2.914 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.732 |
| SRR9715740 | Leaf | 0.525 |
| SRR9715741 | Leaf | 0.589 |
| SRR9715739 | Root | 1.275 |
| SRR9715742 | Root | 2.738 |
| SRR9715743 | Root | 3.054 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.660 |
| SRR8749028 | MeJA induced 9h | 4.527 |
| SRR8749029 | MeJA induced 9h | 2.766 |
| SRR8749030 | Uninduced | 1.115 |
| SRR8749031 | Uninduced | 0.661 |
| SRR8749032 | Uninduced | 1.116 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.110 |
| SRR8400027 | Control - Root | 3.499 |