Gene detail

Gene detail information of Glyur000482s00021742

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G27500.1	0	Tetratricopeptide repeat (TPR)-like superfamily protein
NR	XP_004501933.1	0	PREDICTED: uncharacterized protein LOC101499391 [Cicer arietinum]
COG	YP_003890300.1	3.00E-26	hypothetical protein Cyan7822_5141 [Cyanothece sp. PCC 7822]
trEMBL	tr\|G7J5H4\|G7J5H4_MEDTR	0	Kinesin light chain {ECO:0000313\|EMBL:AES71529.1}

Sequence

Transcript Sequence

>Glyur000482s00021742.1
CTGACATTACAGTTCTGCAAAATTCCTTATTTGTTTTCTTNTTAATCCTTTTGTCTTCATTAAATTATTTATTATCGAATTGACCCTGGANTCCCCATTTTGCCCCCACCATCGCCATTCAGGTCTCTGTTTCATTCCTTCTTCTTTCGTCTTATCCCTCTGGCTTAATACATAACAACATCTCACCAAAAAAGAAAAAGAGGTGTTGAGTTTTTCTTCATTCCTTCCATATATACACACACACATTCACATCTCCGTCTCTCTGTCTCTGCAACCGATCGACAATACCTCTGTTCCTCGTCACACATGCCTCATTTAAGGAACTTTGGTTCCAGAAAGAATTAAAGATGCCGGGAATTGTTACAAATGGATTTCATGATGATGGGGGAGCTAATGAGATGAATGGGAACCATTCCCCCTCTAAGGAAACTTTAACTCCAATCAAGTCCCCAAGGAGTTCTCTGAGTCCGCAGAGACGTCAAAGTGTCGGTCCCAATTTCCCGGTCGATGGGGTGGTTGAGCCCTCGATCGAGCAGCTTTATGAAAATGTGTGTGAAATGCAGAGTTCTGACCAGTCACCCTCACGGCAAAGTTTTGGATCCGATGGTGATGAGTCTAGAATCGATTCGGAATTGCACCATCTAGTTGGAGGACGGATGAGGGAAGTGGAGATAATGGAGGAGGAGGTGGAGGTGGAAAAAAGGCCAGGAGGGAGTTCTAGTTGTGAAGCATCTTCTGGAATGGGTAGTGTATCCAATGACAAGAAGTTGGATAAGGTGGATGAGATTCAATCTGCTAGTACAAGTTCCACTNCCTCAGAAAAATCTGTCAAAGCATTAAAGTCACAGTTGGGTCCTGACACTTCACCAAAATCAAAGCCCAAAGGAAAAGGTCCTCCTGCAAAACCTCCTATGNAGAGAAAGAATGATAAGCCTTTGAGAAAACAAACTAGAGGAGTTACTGGCTTGAAGAATTCAAAGAATTGTCCTTTGGGAAAGTCCGTGNCACATGGTCGAATTGAGAATTCGGTTGAATCAGTATTAGATAGACCAGAGCGGGCACCGGTATTACTACAGCAAGCAAGAGACCTTATTTCATCAGGAGATAATCCGCATAGAGCTCTTGAATTAGCTCTTCAAGCAATGAAACTGTTTGAGAAGATTGGTAATGGGAAACCGAGTTTGGAGCTGGTTATGTGCTTACATGTTACAGCAGCAATATATTGCAGCTTGGGCCAATACGACGAGGCAATTCCAATTCTTGAGCGCTCAATTGAGATCCCTGTTACTGGGGAAAGCCAACAGCATGCCCTTGCTAAATTTGCCGGTCACATGCAACTGGGAGACACCTATGCTATGCTGGGCCAGCTTGAGAATTCAATTATGTGCTACACTGCTGGGTTTGAAGTCCAGAGGCAGGTTTTGGGAGAAACAGACCCAAGAGTTGGTGAAACCTGTCGGTACGTGGCTGAAGCTAATGTTCAAGCTTTGCAATTTGATGAAGCAGAGAGGCTCTGTCAATTGGCTCTTGACATTCATAAATCAAATAGTTCAGCCCCATCTCTTGAAGAGGCAGCTGATAGGAGGCTAATGGGCCTTATATGTGAAACAAAGGGAAACCACGAAGCAGCTCTTGAGCACCTCGTTTTAGCCAGCATGGCGATGGTAGCAAATGGCCAGGAAGTGGAAGTGGCATCTGTTGACTGCAGCATTGGAGACACATACTTATCCTTGTCTCGATATGATGAGGCCGTCTTCGCGTATCAGAAAGCGCTAGAAGTTTTCAAGACCAGCAAAGGAGAGAATCATCCGGCAGTAGGATCAGTCTTTGTACGTTTGGCTGACTTGTATAACAGGACAGGGAAGATAAGGGAATCAAAATCACATTGCGAGAGTGCACTTAGAATATACAAGAATCCAANGCCTGGAGTTGCTCCAGAGGAGATTGCTAATGGTCTTGCGAATGTTTCAGCTATCTATGAGTCAATGAATGAGCTTGAGCAGGCACTGAAGTTACTGCAGAAAGCACTGGAGATATATAATGATGCCCCTGGTCAACAAGGCACAATAGCAGGAATTGAAGCTCAGATGGGGGTCATGCACTACATGTTGGGAAACTATACTGAATCTTACAGCACTTTAAAGAAAGCTATCTCAAAGCTTCGTGCCATTGGAGAGAAGAAATCATCCTTCATTGGTATTGCTCTTAATCAAATGGGACTTGCCTGTGTGCAACATTATGCNTTAAGTGAGGCTACAGAATTATTTGAGGAAGCAAATAGTATTTTGGAACAGGAGTTAGGACCTTATCACCCTGAAACGCTTGGTGTATATAGTAATCTTGCTGGCACATATGATGCAATTGGCAGGGTGGATGATGCAATTCAAATTCTGGAGTACGTTGTTAGTGTGAGGGAGGAAAAGCTTGGGACAGCAAATCCTGATGTGGATGATGAGAAGAGAAGGTTGGGTGAGTTGTTGAAGGAAGCAGGTAGAGTTCGGAGCAGAAAAGCCACGTCACTTGAGAACCTTCTTGATGGCAATGCTCGCACTGTAAACAACCTTTTCATCAATGCCTGATATAAGGATGCCTGGTCTATGACTCATCAAAGGAACTTGATTCTTCGATGCTTGACAGGAACACAAAAAGGTGCAATTTGAAAAGCAGAAGCGATNTGCATATCCTGAGAGTGTTAATTTATGGGGTAAAGTTATGTGTAACAATTAATTAATGGGGTAAATTGAAATCATTGAAGAGTGTAATAATTTATTCTAAAATATTATTTGAAAGCTAAATTATTTGTATGATATACGATATTATGTTATACAGATACACCCCCTGTTTGTGTATATAACATTTTTCCCGTTGTTTCATATCAAGAAAAGGCGCTCTCTCTATGTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00482	129513	133455	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000482s00021742.1	PF13176.1	TPR_7	289	311	0.0041
Glyur000482s00021742.1	PF13181.1	TPR_8	328	348	0.15
Glyur000482s00021742.1	PF13424.1	TPR_12	448	522	2.10E-10
Glyur000482s00021742.1	PF00515.23	TPR_1	543	564	0.012
Glyur000482s00021742.1	PF13424.1	TPR_12	616	690	3.70E-11

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.512
SRR1783600	control	7.556
SRR1783602	moderate drought stress	6.769
SRR1811619	moderate drought stress	6.591

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	17.285
DRR006520	Root Summer glycyrrhizin high producing strain	17.319
DRR006521	Root Winter glycyrrhizin high producing strain	27.857
DRR006522	Root Winter glycyrrhizin high producing strain	27.259
DRR006523	Root Summer glycyrrhizin low producing strain	12.334
DRR006524	Root Summer glycyrrhizin low producing strain	12.172
DRR006525	Leaf Summer glycyrrhizin high producing strain	22.943
DRR006526	Leaf Summer glycyrrhizin high producing strain	22.770

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	38.336
SRR2868004	Drought Stress (root)	51.793
SRR2967015	Control (root)	47.303

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	33.447
SRR9715740	Leaf	35.408
SRR9715741	Leaf	35.542
SRR9715739	Root	1.743
SRR9715742	Root	18.521
SRR9715743	Root	15.413

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	19.360
SRR8749028	MeJA induced 9h	50.511
SRR8749029	MeJA induced 9h	30.377
SRR8749030	Uninduced	46.290
SRR8749031	Uninduced	65.673
SRR8749032	Uninduced	39.710

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	30.284
SRR8400027	Control - Root	30.087