Gene detail information of Glyur000482s00021739 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G62820.1 | 1.00E-40 | Uncharacterised protein family (UPF0497) |
| NR | XP_003601282.1 | 4.18E-125 | hypothetical protein MTR_3g078010 [Medicago truncatula] |
| Swissprot | tr|Q501G6|CSPLY_ARATH | 1.00E-65 | CASP-like protein 4A2 |
| trEMBL | tr|G7J5H7|G7J5H7_MEDTR | 2.00E-125 | CASP-like protein {ECO:0000256|RuleBase:RU361233} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00482 | 108717 | 110399 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000482s00021739.1 | PF04535.7 | DUF588 | 130 | 287 | 3.90E-23 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 20.523 |
| SRR1783600 | control | 19.702 |
| SRR1783602 | moderate drought stress | 18.049 |
| SRR1811619 | moderate drought stress | 18.177 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 15.832 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 17.063 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.130 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.943 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 19.275 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 19.229 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 9.550 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 9.364 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 21.079 |
| SRR2868004 | Drought Stress (root) | 22.502 |
| SRR2967015 | Control (root) | 27.874 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 12.914 |
| SRR9715740 | Leaf | 13.001 |
| SRR9715741 | Leaf | 11.419 |
| SRR9715739 | Root | 35.148 |
| SRR9715742 | Root | 33.195 |
| SRR9715743 | Root | 34.961 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.541 |
| SRR8749028 | MeJA induced 9h | 3.273 |
| SRR8749029 | MeJA induced 9h | 1.392 |
| SRR8749030 | Uninduced | 2.243 |
| SRR8749031 | Uninduced | 0.503 |
| SRR8749032 | Uninduced | 1.858 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 24.604 |
| SRR8400027 | Control - Root | 20.273 |