Gene detail information of Glyur000482s00021733 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G70370.2 | 5.00E-177 | polygalacturonase 2 |
| NR | XP_004501939.1 | 0 | PREDICTED: probable polygalacturonase non-catalytic subunit JP650-like [Cicer arietinum] |
| Swissprot | tr|P92990|JP650_ARATH | 0 | Probable polygalacturonase non-catalytic subunit JP650 (Precursor) |
| trEMBL | tr|G7J5I4|G7J5I4_MEDTR | 0 | Polygalacturonase non-catalytic protein {ECO:0000313|EMBL:AES71540.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00482 | 73421 | 75280 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000482s00021733.1 | PF03181.10 | BURP | 402 | 617 | 8.70E-65 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.306 |
| SRR1783600 | control | 1.368 |
| SRR1783602 | moderate drought stress | 1.055 |
| SRR1811619 | moderate drought stress | 0.992 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.317 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.524 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.297 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.053 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.450 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.449 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 10.175 |
| SRR2868004 | Drought Stress (root) | 6.203 |
| SRR2967015 | Control (root) | 6.298 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.501 |
| SRR9715740 | Leaf | 0.565 |
| SRR9715741 | Leaf | 0.998 |
| SRR9715739 | Root | 1.100 |
| SRR9715742 | Root | 3.158 |
| SRR9715743 | Root | 2.639 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.331 |
| SRR8749028 | MeJA induced 9h | 1.048 |
| SRR8749029 | MeJA induced 9h | 0.323 |
| SRR8749030 | Uninduced | 0.736 |
| SRR8749031 | Uninduced | 0.226 |
| SRR8749032 | Uninduced | 0.068 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.138 |
| SRR8400027 | Control - Root | 4.429 |