Gene detail

Gene detail information of Glyur000482s00021726

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G60190.1	7.00E-127	ARM repeat superfamily protein
NR	XP_004501944.1	0	PREDICTED: U-box domain-containing protein 18-like [Cicer arietinum]
COG	YP_001958455.1	1.00E-12	hypothetical protein Aasi_1435 [Candidatus Amoebophilus asiaticus 5a2]
Swissprot	tr\|O80742\|PUB19_ARATH	5.00E-157	U-box domain-containing protein 19
trEMBL	tr\|A0A072UZQ5\|A0A072UZQ5_MEDTR	0	Spotted leaf protein, putative {ECO:0000313\|EMBL:KEH35047.1}

Sequence

Transcript Sequence

>Glyur000482s00021726.1
ATGACTCCTAAACTGAGTCCAACCCCAAACCAAAGGCGTCCCCTATCCTTCCCGGCGGTTCACACCTGCGAGGGCATATCTCCGGCAACCCTCATCGCTTCTCTAATCACTCTCTCACAAAACATATGCAGTTTCCCTCCCAAGTCCTTCCCAACCCAACGACGAAACTGCAGAGAAACAACACGCCAAATCGCCATTCTCCTCATATTCTTCCAAGAAATCCACGACCGCGGTTCCTTCAACCCAAACACAATCATCCCCTGCTTCTCGGAGCTCCACGTTACCCTCCAAAAAATCCACTTCTTAATACAAGACTGTGCCCNCGAAGGTTCCCGCCTCTGGATGCTAATCAAATCCCAATTCGTCGCCACACAGTTTCACGTCCTCATGCGTGCCGTTGCCAACGCCCTCGACGCGCTTNCCCTGCACGAAATCGACGCGTGCAGCGAGGTGAAAGAGCTAATTGAACTATTAACCAAACAAGCTAGAAAGGTCAAGTTGGAACACGACCCTAACGACGAACGCGAAGAAAAGCGAGTCGGTTCGATTTTGAATCAGTTAGAGAAAGGAACAGAGCCTGACGTGGATGCCATGAAGCAAGTCCTCGACTACCTCGAAATCAAAACTTGGACCGATTGCAACAAGGAAATCAAATTCCTCGAAGACGAATCTCATTCTAACGAACGAGAGGGAGAGGTTCCGTTGTTGAGTGGTTTAACAGGGTTTTTGTGCTACTGTCGAGTGGTGATATTCGAAACTCTGGATTTCCAGTCCCTTAGATCAGAAAATTCCGAAGCCAGGTGCAGCACGAACATGTTAAGCTGCGTAACACCGGATGATTTCCGTTGCCCGATTTCGCTCGAGCTCATGACGGATCCCGTAACCGTTTCCACCGGCCATACTTACAACAGAGCCTCCATTGATAAATGGTTAAAAGCGGGGAACATGACGTGTCCAAAAACAGGGGAGAGGCTCACCACCACTGAGTTTTTCCCCAACACAGCGCTTAAAACGCTCATCCAACGGTTCTGTTACGATAACGGCGTTACAACGGCCAGCTGGTCCCACCACAACAGCGTAACCGCAGCAACGAAAACCGTCGAGGCCGGTAGTCCCGCCGCAGCACACGCCATGCAGTTCACGTCGTGGTTCCTCACCCGGAGGCTGGTTTTCGGAACCGAGGAACAGAAAAACAAAGCCGCTTACGAGGTTCGTTTGCTTGCAAAGTCCAACGTTTTCAATAGGGCGTGTTTGGCTGAAATGGGAACNGTGCCACCGCTGCTGGATCTTCTGGCCACGGACGATACTCAAGAGAACGCAATCGCTGCTCTATTGAAGCTCTCAAAGCACGCCACGGGGCAGCAAGTTATTATGGAGACTAGGGGTTTACCACAAATCGTTAAGGTTCTAAAAAACGGACACAGTCTAGAAGCTCGCCGAATCGCGGCTGCAACAATATTTTATCTCTCTGCGGTGAAAAAGTACAGAAAATTAATTGGAGAAAATCCAGACGCGATTCCGGCTTTGGTTGAAATGATAAGAGAAGGAATAACCTACGCAGTGGTTGCGATTTTCGGGTTGCTCTTGCTTCCTAGGAATCGCCCCAAGGTTGTTGCTGNCGGTGCTGTTCCTGCAATCATTGGTGTTTTGGCTTGTTCGGACAATGCTCATCTTGTTACGGATTGTTTGGCAGTTCTGGTGGCGCTGGCGGAGAGTGCGGAAGGGGCGCGTGCTATATTTGAAGCCTCGGGTTTGCCGTTGGTTACTGGGTTTTTGGGATCGGCTACGTCGCNCGCAGGGAGGGAGTACTGTGTTTCAATTTTGCTATCGCTGTGCGGTAATATTGGTGCGGAGGTTATTGGTGTTCTGGCTAAGGATCTTTCGGTTATGCCTATGCTTTATGCGCTTATTACGGAGGGTACTCCTCGTGCGGCCAAGAAAGCGCGATCCCTCATCAATGTCCTACAAGAATTCTATGAGAGAAGAGCTTCTTCGGGAATGCCGGGTTCGTCTGTTTCGTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00482	37336	39357	+

Gene family

Gene family	subfamily
Ubiquitin Family	U_box

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0016567 protein ubiquitination

molecular_function

GO:0004842 ubiquitin-protein transferase activity

GO:0005488 binding

GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000482s00021726.1	PF04564.10	U-box	278	345	9.90E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.600
SRR1783600	control	0.657
SRR1783602	moderate drought stress	1.853
SRR1811619	moderate drought stress	1.826

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	10.165
DRR006520	Root Summer glycyrrhizin high producing strain	9.918
DRR006521	Root Winter glycyrrhizin high producing strain	7.441
DRR006522	Root Winter glycyrrhizin high producing strain	7.213
DRR006523	Root Summer glycyrrhizin low producing strain	40.298
DRR006524	Root Summer glycyrrhizin low producing strain	39.400
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.231
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.151

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.205
SRR2868004	Drought Stress (root)	4.910
SRR2967015	Control (root)	8.439

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	17.486
SRR9715740	Leaf	14.853
SRR9715741	Leaf	37.567
SRR9715739	Root	28.542
SRR9715742	Root	24.439
SRR9715743	Root	25.488

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.993
SRR8749028	MeJA induced 9h	10.365
SRR8749029	MeJA induced 9h	2.955
SRR8749030	Uninduced	6.460
SRR8749031	Uninduced	2.030
SRR8749032	Uninduced	2.185

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.695
SRR8400027	Control - Root	2.042