Gene detail

Gene detail information of Glyur000481s00027086.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G48900.1	0	Signal recognition particle, SRP54 subunit protein
NR	KDP37062.1	0	hypothetical protein JCGZ_06118 [Jatropha curcas]
COG	YP_183899.1	6.00E-117	signal recognition particle protein Srp54 [Thermococcus kodakarensis KOD1]
Swissprot	tr\|P49972\|SR542_SOLLC	0	Signal recognition particle 54 kDa protein 2
trEMBL	tr\|A0A067KLN9\|A0A067KLN9_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP37062.1}

Sequence

Transcript Sequence

>Glyur000481s00027086.1
CCAATATTCATTATTCANTATCGAAGCAATCGAAATAAAAAGCGGCTTTTTCATTATATCAAAACAAAAAAATAGCGGCTTTTTCAGAAAAAAAGAAAGAAATAAAAAGCGGCTTCTTTCACCNGCGGTGAAGAAAGAGAAAAAAGGAGTCTCCGTCGTGCGAAAAACCCTAATTTCAGAAATCGGGATTCGGGGGAAAAATTGATCGAGGGAATTGGGGTGAACAAGAGGAGCGAAGATGGTGCTAGCACAGCTAGGAGGGAGCATCTCGCGTGCTCTTCAGCAGATGAGCAATGCGACGATAATCGACGAGAAGGTGCTGAACGATTGCCTGAACGAGATCACTCGCGCTCTTCTCCAATCCGATGTACAATTCAAGCTCGTCCGTGACATGCAGACTAACATCAAGAAGATCGTAAACCTTGACGATCTCGCTGCTGGTCACAACAAACGCAGGATCATCCAGCAGGCTGTGTTCAATGAACTCTGCAAAATCTTGGATCCTGGAAAGCCCTCTTTCACTCCCAAAAAAGGAAAAACAAGTGTTGTCATGTTTGTTGGTTTACAAGGATCTGGAAAAACAACAACTTGTACGAAATATGCATATTATCATCAAAAGAAAGGCTGGAAGCCGGCTCTAGTATGTGCGGATACATTCAGAGCTGGTGCNTTTGATCAGTTGAAGCAAAATGCCACCAAAGCTAAGATCCCNTTCTATGGAAGCTATATGGAGTCAGATCCTGTAAAAATTGCTGTGGAAGGTGTGGAAAGATTCAAGAAAGAAAACTGTGATCTTATAATTGTTGACACCAGTGGGCGGCACAAACAAGAAGCTGCTCTTTTTGAAGAAATGCGCCAAGTTTCAGAAGCAACGAAACCGGATCTTGTTATATTTGTTATGGATAGCAGTATCGGTCAGGCTGCTTTTGATCAGGCTCAAGCATTTAGACAGAGTGTTGCGGTAGGAGCTGTCATTGTCACTAAAATGGATGGCCATGCAAAGGGTGGTGGTGCGCTTAGTGCTGTTGCGGCAACAAAGAGTCCTGTCATATTCATTGGAACTGGAGAACACATGGATGAATTTGAAGTTTTTGATGTTAAACCATTTGTCAGTCGTCTATTAGGCATGGGAGACTTGTCTGGGTTCATGGACAAAATTCATGAAGTTGTTCCTATGGATCAACAGCCTGAACTGCTNCAAAAGCTGTCAGAAGGAAACTTCACATTGAGGATTATGTATGAGCAGTTTCAGAACATACTTAAAATGGGTCCCATCGGCCAGGTTTTTTCGATGCTACCAGGATTTAGTGCTGAATTAATGCCAAAAGGCCGTGAGAAGGAAAGCCAGGCAAAAATTAAGCAGTTGGATAGTTCAAACCCAAAGCTCATGAATGAGTCACGAATAATGCGAATAGCTCGGGGTTCTGGTCGTCAAGTTAGGGAAGTAATGGAGATGATGGAAGAGTACAAACGTCTTGCAAAGATATGGAGCAAAATGAAAGGGCTTAAAATNCCAAAGAAGGGAGAAATGAGTGCCTTATCCCGAAATATGAATGCCCAGCACATGAGCAAAGTCCTCCCTCCACAGATGCTNAAGCAAATTGGAGGCATGGGTGGGTTACAAAGCTTGATGAAACAGATGGGATCTGCTAAGGACATGATGGGAATGTTTGGTGGTGGTGATAAGTAGATTTTTTATGGCTTATGAGCTGAGGATTGTTTCTGATCACTACTACATACTCTTTATGAAGGCTTCATAAGAGTTGGATTCATCATTGTGCAATTTATGCTGTTGTGCTGTCAACCAATCTACGGAAATCTCAATGGGTGNAATAGTTCATTTCAATAATACCTTGGCAGTTTTCCCCCATGTAAAACTAAAATCCTTTTCTCCCCTATTTCTGTATATTTATTAGTCTTAGATAGCAGTCAAGCATTTATTGTGAATCGGAAATTTTCTTGATTAGTGTAACATTAAAAATAAATTATGTATTGCTCCTCTCTCGGATATGTTGAAAAGGAGGAGGTTCATGCTGACAGGTCTGTGTTTGCAATTCATGAGGGCTGAAATGTGGTAATCACATTAGCCACAGCCATAGACATTAACTCGGTTTAANATTAATATCCATGTATATTTCTTTTGCTTTGGACTTCCATTGTTTCTTCCCTTTTGCTTATCTTTACATGAAAATCTTCTTTTTGAGTGCTCACAGTACATTGCCAGGGAAAGCTTAGAGTTAACCCTGTTTCTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00481	134246	139686	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K03106	SRP54, ffh	EC:3.6.5.4	Protein export	map03060
			Bacterial secretion system	map03070
			Quorum sensing	map02024

Gene Ontology

biological_process
GO:0006614 SRP-dependent cotranslational protein targeting to membrane

cellular_component
GO:0048500 signal recognition particle

molecular_function

GO:0003924 GTPase activity

GO:0005525 GTP binding

GO:0008312 7S RNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000481s00027086.1	PF02881.14	SRP54_N	6	83	3.40E-13
Glyur000481s00027086.1	PF00448.17	SRP54	102	296	3.80E-78
Glyur000481s00027086.1	PF02978.14	SRP_SPB	327	416	3.10E-16

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	19.831
SRR1783600	control	20.095
SRR1783602	moderate drought stress	20.692
SRR1811619	moderate drought stress	20.553

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	36.278
DRR006520	Root Summer glycyrrhizin high producing strain	35.760
DRR006521	Root Winter glycyrrhizin high producing strain	46.304
DRR006522	Root Winter glycyrrhizin high producing strain	45.357
DRR006523	Root Summer glycyrrhizin low producing strain	29.126
DRR006524	Root Summer glycyrrhizin low producing strain	28.894
DRR006525	Leaf Summer glycyrrhizin high producing strain	20.366
DRR006526	Leaf Summer glycyrrhizin high producing strain	20.483

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	63.256
SRR2868004	Drought Stress (root)	57.402
SRR2967015	Control (root)	57.985

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	34.921
SRR9715740	Leaf	36.329
SRR9715741	Leaf	46.654
SRR9715739	Root	4.978
SRR9715742	Root	26.569
SRR9715743	Root	23.711

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	56.481
SRR8749028	MeJA induced 9h	55.683
SRR8749029	MeJA induced 9h	45.325
SRR8749030	Uninduced	39.153
SRR8749031	Uninduced	54.810
SRR8749032	Uninduced	39.360

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	53.359
SRR8400027	Control - Root	49.620