Gene detail

Gene detail information of Glyur000481s00027081

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G15850.1	2.00E-109	fatty acid desaturase 5
NR	XP_004506950.1	0	PREDICTED: palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic-like [Cicer arietinum]
COG	YP_001660047.1	1.00E-62	delta 9 acyl-lipid desaturase [Microcystis aeruginosa NIES-843]
Swissprot	tr\|Q949X0\|ADS3_ARATH	8.00E-135	Palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic (Precursor)
trEMBL	tr\|G7JGX9\|G7JGX9_MEDTR	0	Fatty-acid desaturase {ECO:0000313\|EMBL:AES86572.2}

Sequence

Transcript Sequence

>Glyur000481s00027081.1
CAAACCCAAATTCTACACACATCACCACCTTCAAACTTCAAAAGCCTCCATTTTTCAGTTTCACACCCTTCACAAGGGCTCAAGTAAACAAAAAACAGAACCTTTAACCCTGCATGGCTATGATAACCTCTCAGCCAAAAAATCCCATTCTCCATTACCAATTCACAACCTTTCACCGTGCAATTCCACAATTGAATAGGTCCCAAGTTGTTCTTGGGTCCTTCTCTTTAACCCACAATGCCAAGTCCAATAAAGTTTGCAACTTTAACTCAAACTCAAGCAAATTCCCCTTGAAAAACAACCCCTTTACCTATAATCTTCCATTGATAGCCAAAGCCAATAATAATAATAATAATGTGGCACTTGGAAAAGAAGAATCTTTGGTGGAGGGTCCCTTCTTGAAGAAGAAGAACAGGAAGATTCTTCTATCTGATGTGGAGGTGAAGAGAGAGAGGAGAGTGTTCTTTGGGAGGAAGTGGAATTCATTGGATATTGGAACTGCTGCTATTGTTTTGGCAATGCACTTGCTTTGCCTCTTTGCACCATTCCAATTCAATTGGCATGCTTTTTGGGTTGCTGTGGNACTTTATGTTGTCACTGGCCTCTTTGGGATCACACTCTCTTTCCATAGGAATCTCTCTCACAAAAGTTTTAGGCTTCCAAAGTGGCTTGAATATTTCTTTGCCTATTGTGGTGTTCTGGCTCTTCAGGGGAACCCAATAGATTGGGTTAGCACACATAGGTATCATCACCAGTTCTGTGATTCTGAGAAAGACCCACATAGCCCCACTGAAGGATTCTGGTTTAGCCACATGAGTTGGCTCTTTGATACCAATTCTGTGGTAGAAAGGTGTGGAGAGCCAAACAATGTTGGTGATTTGGAGAAACAACCCTTCTATAGATTTATCAGAAACACTTACATTGTCCATCCATTTGCTTTGGGAGCCCTTCTATATGCCATAGGGGGATTTCCTTTCATTGTTTGGGGAATGGGTTGGCACAATAACCACCATGCCTTTGAGTACTCAGCTAGACATGGCTTAGAGTGGTGGCAACTAGACATGACATGGTACATGGTGAGATTTCTCCAAGCTATTGGGTTGGCCACTGAAGTTAAGGTACCCAGTGAGAGTCAGAAGCAAAGAATGGCATTGAATAATAGTGATGCCATAGCCACATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00481	64309	66282	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006629 lipid metabolic process

GO:0055114 oxidation-reduction process

molecular_function
GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000481s00027081.1	PF00487.19	FA_desaturase	151	234	1.00E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.124
SRR1783600	control	0.124
SRR1783602	moderate drought stress	0.229
SRR1811619	moderate drought stress	0.220

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.183
DRR006520	Root Summer glycyrrhizin high producing strain	0.169
DRR006521	Root Winter glycyrrhizin high producing strain	2.622
DRR006522	Root Winter glycyrrhizin high producing strain	2.751
DRR006523	Root Summer glycyrrhizin low producing strain	0.085
DRR006524	Root Summer glycyrrhizin low producing strain	0.186
DRR006525	Leaf Summer glycyrrhizin high producing strain	22.427
DRR006526	Leaf Summer glycyrrhizin high producing strain	21.977

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.361
SRR2868004	Drought Stress (root)	0.244
SRR2967015	Control (root)	0.376

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	26.897
SRR9715740	Leaf	27.673
SRR9715741	Leaf	20.136
SRR9715739	Root	0.134
SRR9715742	Root	0.679
SRR9715743	Root	0.433

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.289
SRR8749028	MeJA induced 9h	4.450
SRR8749029	MeJA induced 9h	0.740
SRR8749030	Uninduced	2.269
SRR8749031	Uninduced	0.515
SRR8749032	Uninduced	0.276

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.281
SRR8400027	Control - Root	1.092