Gene detail

Gene detail information of Glyur000481s00027076

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G15810.1	5.00E-71	Protein of unknown function (DUF567)
NR	AFK37784.1	1.02E-135	unknown [Lotus japonicus]
Swissprot	tr\|Q9LVZ8\|LOR12_ARATH	1.00E-88	Protein LURP-one-related 12
trEMBL	tr\|I3SBZ2\|I3SBZ2_LOTJA	4.00E-136	Uncharacterized protein {ECO:0000313\|EMBL:AFK37784.1}

Sequence

Transcript Sequence

>Glyur000481s00027076.1
TGCCCCTCAATCTGCTACTAGAGTTGATATAGATAGTTGGACCCTCCATTCGAATCCTGAATTCTTCAATTAATAGACCATATGTAAATTACAGTTCTGACCTTACACGGTGACATACCTCCCCTAGTCTAAATTTATGGAAGAGAGAAAAAAAAAAAGATGTCCCACAATCTTCCTTTACAATTCACACCCCATCTCAATATATATGTATTTTTTCCCCATATCACGAAGACACGTTTTCTAACACGGAAAACGGAGCTCCAAGCTCCCCTCCATACATACACACTTATAAATAATAATCTTCCTCTTAACGCTCCCACTTGGTTCAGCTTTCACTTCCAAGATTCCAATTCTTGTTTGTTGCTGANCGAGATAAAAAAGAAGAATGAATGAGGAGTTGGTTGTGCAGAATGGGTATGTGTTTAAAGAAGAGACCCACCTCACGGTGCTGAAAACCTCTCTGTTCTTTGCTGGTGATGGCTTTGCGGTGTATGATTGTAAGGGCCAACTCGTCTTCCGGTTCGACTCATATGGACCCCACACTCGTGATAAGGACGAGCTTGTTCTCATGGATCCCCATGGCCGTTCTCTTCTCACCCTTCGCCGAAAGAAACCGAGTCTTCATCAACGGTGGGAAGGGTTCAGAGGGGAGAGAACGGACGGTGATAAACCGATATTCAGCGTGAAGAGATCNTCGATAATCGGACGGTCAAATACGAGCGTNACGGTGGAGGTGTACGATAAACCCGGTATGGAGTACCTCATTGAAGGGTGCTTCCCGCAACGGTGCTGCAAAGTTTTCANTGCATCGAAGAAATTAGTGGCTGAGATTCGTCGCAAAGTGGACCCCACCACCAGCGTTATGCTTGGGAAGGAAGTGTTCATGCTTTGCGTTCAACCGGGTTTTGATGGAGCCTTTGCCATGGGATTGATCTTGGTACTTGATCAGATCAACGGTGAGAGTTTCTTTGATAGTGGGACTACGGAGCCTGCGGTGCACCCTGCTACAGAAGATTGAGGACTTGCTTCTCTAGTTCTCTTCGGTTCTATTCCTATATTTGTCTTTATTTTAAATTCCCACTCACTAATCTTTGGAGTTTGGAGTGTCCCCTCAAAAGGGTTCATCTCACTTTAAAAAAATGAGTACATCGTCGTTTTCGTCCTTGAAATTACAACTCGCTGTGAAGGTTTTTTTTTGACAAAACTCGCTGTCAAGTTGATCTTTGAAACTAATAAAATTAAAAAATAGTCCTTGAATTTGCTTTCCGCCAGTCATATTAGTCCCAAACGTTACTTTCGTTACTTAACACTGACGCCATTTACCGTGCTGATCTGGTCTATTAAATGCCACGTATGGTTCCACGTGCACA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00481	9347	11950	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000481s00027076.1	PF04525.7	Tub_2	6	185	2.70E-56

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	25.727
SRR1783600	control	26.905
SRR1783602	moderate drought stress	32.282
SRR1811619	moderate drought stress	31.825

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	13.160
DRR006520	Root Summer glycyrrhizin high producing strain	12.135
DRR006521	Root Winter glycyrrhizin high producing strain	10.126
DRR006522	Root Winter glycyrrhizin high producing strain	10.043
DRR006523	Root Summer glycyrrhizin low producing strain	27.888
DRR006524	Root Summer glycyrrhizin low producing strain	28.241
DRR006525	Leaf Summer glycyrrhizin high producing strain	37.839
DRR006526	Leaf Summer glycyrrhizin high producing strain	36.489

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	26.896
SRR2868004	Drought Stress (root)	23.442
SRR2967015	Control (root)	43.053

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	163.683
SRR9715740	Leaf	156.611
SRR9715741	Leaf	206.570
SRR9715739	Root	153.031
SRR9715742	Root	100.959
SRR9715743	Root	107.607

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.367
SRR8749028	MeJA induced 9h	9.046
SRR8749029	MeJA induced 9h	10.283
SRR8749030	Uninduced	9.538
SRR8749031	Uninduced	6.836
SRR8749032	Uninduced	7.034

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	31.920
SRR8400027	Control - Root	40.296