Gene detail

Gene detail information of Glyur000480s00023804

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G38460.1	1.00E-108	geranylgeranyl reductase
NR	XP_004504588.1	0	PREDICTED: heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic-like isoform X1 [Cicer arietinum]
COG	YP_007122344.1	2.00E-78	geranylgeranyl pyrophosphate synthase [Microcoleus sp. PCC 7113]
Swissprot	tr\|Q39108\|GGR_ARATH	1.00E-136	Heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic (Precursor)
trEMBL	tr\|I3S8C8\|I3S8C8_MEDTR	0	Uncharacterized protein {ECO:0000313\|EMBL:AFK36520.1}

Sequence

Transcript Sequence

>Glyur000480s00023804.1
CCACCCCACCACCCAAATTCTTATCCATAACCATTAACATAGTATTATATGCAAGTATTTGTTCAATTTTTTTTCTTCTAAGTGATGGAATTTTCTACTTAGAAAATGAAAAGGGACGGCACTTGTTTTTTAAATAGAAGTGATAATCAGACATAATTTTTTATTTGGGTGGATGAGTAGCCCCTNTTTTTCCAATACAAATTCAACATTGTTTCCATTTTTAATCTTTACCGTGCCAATACCCGAAATTAATTGGTTTTGAGTTTAGTTTTAAGTAACCCACATGCAATTATGGTCTTATGGAATACAAGATCCGTGTTATGTTACTCTTGGTGCTGCTCTAACCTTATCCCTTGGAAAAGCACCATTGCTTAGTGCAGTGAGTCACACGCCATACCACACCTTATCACAACGCCACTGACGCCCAAATCTCACCACCACTTGCATCCATTCTCATATCGAGTTGCAGATGGCTCCTTTTTCTATTGCAACATTGCCCTCTTTACACATCTGCCACCTCCNCAAACCCCCCAATCTTATCCTTCCAATTCGCTGCTCCACAGCTTCTTCTTCTCCTTCCTCTGTTTCCAGTCGATCAAAAGCTGTCCACTTTGATTTGAAGACATATTGGACTTCCCTAATGTTGCAGATCAATCAGAAGCTCGATGAAGTTATTCCAGTTCAGTTTCCTTCAAAGATATACGAAGCTATGAGGTATTCAGTCCTTGCCGAAGGTGCCAAGCGAGCCCCNCCGGTTATGTGCATCTCTGCTTGTGAACTCTTCGGAGGCAGCCGCCTTGCTGCCTTCCCCACTGCCTGCGCCCTTGAAATGGTTCATGCNGCTTCATTGATACATGATGATCTTCCCTGCATGGATGACTCACCCTCACGCCGTGGCCAGCCCTCAAACCACGCCGTCTATGGTGTTGACATGGCAATTCTTGCGGGCGATGCACTCTTTCCCCTTGGATTTCAGCACATTGTTTCACACACTCCCTCTAACCTGGTTCCTGGGCCCCGCCTCCTCCGTGTGATTGCTGAGATAGCCCGCACTGTGGGCTCCACTGGAATGGCTGCAGGGCAGTTCCTGGACCTTGAAGGGGGTCCCAATGCCGTTGGATTTATACAGGATAAAAAGTTTGGTGAAATGGGGGAGTGTTCTGCAGTGTGTGGAGGATTGTTGGCCGGTGCTAAAGATGATGANATAGAGAGGCTGAGGAGGTATGGCAGAGCTGTTGGGGTATTGTATGCAATTGTGGATGATATTTTGGAAGAGAGATTGAAATCTGAGGGAGATAATGACATGAANAACAAGGGGAAGAGTTATGTCGGGGTTTATGGGGTTGAGAAAGCAGCAGAGGTGGCTGAAGAACTTAGAGCAAAGGCTATGGAAGAATTAGATGGATTTGAGAAGTATGGGGAGCGAGTCTTACCTCTCTACAGTTTTGTGGATTATGCTATTAATAGAAGTTTCAGTGTTGATGACACCAGTGGATGATGCGTTCTATAAATTTAACTCCATATATACTTGAGAATCAACCGTGAGCAGTTAGAGCTTGGTTATCTTGATCCCATCTTATAGGGATGAGGAAGTTTCGAAGCATGGACCCGCGCGGGGGGGTAGCCATGTCTATGTTAGATATATATATCATATATGTATCCTACAGTAGCATAAAAACATCATGTCATCACCCTTGTCTTACATTTCGCATTAAAAGGAATTAAATAGAATTGCACAAATTCCAGCCATATTTAAAGGAAAGAATCCCCCCTCCTTCTGGCATTGAAATAAATGCAAAACAAATAAGCTGATAATTGATTATATAGGGAGTAAGTTCTTGTTTGTTTTAGATTCCCAGCTGACTGTAGAATCAATTCTAAAGCCGTCCAATTCTGCAAGTGTTTAGATTCTGCACCTACCAATAGAGGAGGACATGGGCTGTAATGGATAACAAACTGGACTTAGTAAACAACTGTCTCATATTCAAGTTATCTTGTAAATTCANAAGTTATTTTGTATTTTGTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00480	151977	155389	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K13789	GGPS	EC:2.5.1.1 2.5.1.10 2.5.1.29	Terpenoid backbone biosynthesis	map00900

Gene Ontology

biological_process
GO:0008299 isoprenoid biosynthetic process

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000480s00023804.1	PF00348.12	polyprenyl_synt	78	309	1.60E-41

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	17.397
SRR1783600	control	17.877
SRR1783602	moderate drought stress	27.548
SRR1811619	moderate drought stress	27.858

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	22.378
DRR006520	Root Summer glycyrrhizin high producing strain	21.952
DRR006521	Root Winter glycyrrhizin high producing strain	13.119
DRR006522	Root Winter glycyrrhizin high producing strain	12.694
DRR006523	Root Summer glycyrrhizin low producing strain	30.554
DRR006524	Root Summer glycyrrhizin low producing strain	29.322
DRR006525	Leaf Summer glycyrrhizin high producing strain	97.589
DRR006526	Leaf Summer glycyrrhizin high producing strain	97.253

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	28.932
SRR2868004	Drought Stress (root)	61.868
SRR2967015	Control (root)	66.640

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	83.248
SRR9715740	Leaf	113.296
SRR9715741	Leaf	66.072
SRR9715739	Root	18.272
SRR9715742	Root	31.175
SRR9715743	Root	27.460

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	55.796
SRR8749028	MeJA induced 9h	57.556
SRR8749029	MeJA induced 9h	54.785
SRR8749030	Uninduced	31.162
SRR8749031	Uninduced	43.288
SRR8749032	Uninduced	38.089

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	28.367
SRR8400027	Control - Root	23.689