Gene detail

Gene detail information of Glyur000480s00023802

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G68080.1	4.00E-126	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
NR	XP_003531135.1	0	PREDICTED: uncharacterized protein LOC100788718 isoformX1 [Glycine max]
COG	YP_001260653.1	8.00E-11	hypothetical protein Swit_0144 [Sphingomonas wittichii RW1]
trEMBL	tr\|I1KRR4\|I1KRR4_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G09920.1}

Sequence

Transcript Sequence

>Glyur000480s00023802.1
TTTGAACCCCAAATCCAACAACAGCACCACCCACGCCTCTTCCTCCGCAACCTTCTCTCCCTTCACGAATGCAGGGAGTTGGAATTCATCCACAAGAGTAGCAGCACCGTCGGTTACAGACCNAATGTCTTCTCCACCACTCTCTCCCATCTTATTGCCACTAACTCTTCCCACTTCCTCATTCCTTTCATTCCCATCCGAGAAAGGTTGAAAGACAAGNTAGAGGAGTTCTTCCAATGTGAGTACGAGCTCTTCATTGAATTCACCGGTTTAATCAGCTGGAGCAGAGGAGCCAGCATTGGATGGCATAGTGATGATAACAGGCCCTACCTCAAACAACGTCACTTCTCAGTAGTATGTTACTTAAATACATATGGGAAGGATTTCAATGGTGGGCTCTTTCACTTCCAGGATGGTGAACCAGCATCAATTATGCCCATGGCTGGAGATGTTGTGATGTACACAGCTGATCAGCGTAACATTCATTCTGTTGATGAGATAACTGATGGAGAAAGACTCACACTTGCTTTATGGTTCAGTCGTGATGGTTCCCATGATGAGGATACGAAGCTTGTTTCTCTTCTTTCACAANGCCTATTACATGAGAACATTGCTGGTACTTACCTACCTTTGCCCGCATCCAGTAATATGTACTGGTTTTCTCAGGACCAAGCTTCCAATGACCAGTTCGGTTTTAATATTTGTTGGGCTAGACTGCATGTTCACGGATATGACATATATATTCCTCAAGACAGTAGCTGTGAGTGTGATGTCTCTGAATTAATGGCAAAGCCAATGCACTTAGTGAGGGGAAGTGAGTTGCTAGACCAGGAATTTGTCAATGTTTTGCATGCGCTTCAGGTTGTCCATTTCTATTGTTGGAAAGGATCTGCCTTGCAGACCAAGGTATTGAATATAGACTCCAAGGTAGTAAAACTGTCAGATGTGCAAAGAGAGAAAATCAGTGGCCTAAATTCTATACTTTTGAATGATGTTGATTTCGCATCCAGAGTTTTCTGTGGAATGCCTTCCAATTCCGAAGAAAATGGAGGCATTTGCTTTGACTGGACAGGAATCGTGGCTGCTATTGCTGCCTGGGAAGATTATGTGTCGAAGTTAAGCAAACAAATTCATTTACAGTTGCCTTACTGGAGAATGCATCAATCTTTGTATAATGTTCAATTGGCAGAGTNGTATCCATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00480	139111	142078	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0016491 oxidoreductase activity

GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000480s00023802.1	PF13661.1	2OG-FeII_Oxy_4	85	141	1.20E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.838
SRR1783600	control	6.061
SRR1783602	moderate drought stress	6.784
SRR1811619	moderate drought stress	7.400

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.872
DRR006520	Root Summer glycyrrhizin high producing strain	9.201
DRR006521	Root Winter glycyrrhizin high producing strain	15.819
DRR006522	Root Winter glycyrrhizin high producing strain	15.431
DRR006523	Root Summer glycyrrhizin low producing strain	10.756
DRR006524	Root Summer glycyrrhizin low producing strain	10.625
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.460
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.649

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.024
SRR2868004	Drought Stress (root)	8.591
SRR2967015	Control (root)	10.530

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.464
SRR9715740	Leaf	5.388
SRR9715741	Leaf	3.298
SRR9715739	Root	1.563
SRR9715742	Root	2.432
SRR9715743	Root	2.277

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.860
SRR8749028	MeJA induced 9h	3.938
SRR8749029	MeJA induced 9h	2.066
SRR8749030	Uninduced	2.325
SRR8749031	Uninduced	1.293
SRR8749032	Uninduced	1.496

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.772
SRR8400027	Control - Root	9.244