Gene detail

Gene detail information of Glyur000480s00023799.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G14720.1	4.00E-131	xyloglucan endotransglucosylase/hydrolase 28
NR	XP_003638758.1	0	Xyloglucan endotransglycosylase/hydrolase [Medicago truncatula]
COG	YP_003060495.1	1.00E-13	glycoside hydrolase family protein [Hirschia baltica ATCC 49814]
Swissprot	tr\|Q38909\|XTH28_ARATH	2.00E-171	Probable xyloglucan endotransglucosylase/hydrolase protein 28 (Precursor)
trEMBL	tr\|G8A358\|G8A358_MEDTR	0	Xyloglucan endotransglucosylase/hydrolase {ECO:0000256\|RuleBase:RU361120}

Sequence

Transcript Sequence

>Glyur000480s00023799.1
AACACAGCTAGCTGCCTAGCTCAACACACTCCCAGCACCCTCACCAATAAAATATAAGCTTCCTTTGGCTGTGCCTTTCTCTGTAACCAGCTCTTTTCGGCTCTCTCTATCGCTTCTAGCTGTAGAAGATATATTCCAAACCTATCTCCGTCTGTCATTCCTATTCCCTTTCTCCTTCTTCTCCATAACCTTTCTTTGCACCGCTTCTTATATATCTTCTATTCTCTACACACTAATCTTTTGGACTGAGTAAAAACCACTTCGAGGAAGGAAACAATCAATCATGGGAGGGTCTCATATGGGGTTCCTCTTGTTTAGCTCTTTGCTTTTTGTTTTGGCTTCTGCCTCATCCAGACACTTGCCTATCATAGCCTTTGATGAAGGGTACACACCCTTGTTTGGGGATAATAACGTTGTCGTCCATAGGGATGGGAAATCGGTTCATCTTTCACTGGATGAGAGAACAGGTTCAGGGTTTGTGTCTCATGATCTTTACCTTCACGGGTATTTCAGTGCTTCGATTAAGTTGCCTGCTGATTACACTGCCGGAGTTGTGGTTGCATTTTATATGTCGAATGGTGACATGTTCGAGAAGAACCATGATGAAATCGACTTTGAGTTTTTGGGGAACATTAGAGGCAAAGACTGGAGGATTCAGACCAATGTTTATGGCAATGGAAGTACCAGCATTGGCAGAGAGGAAAGATACGGTCTCTGGTTTGATCCTGCAGAGGATTTCCACCAGTACAGTATTCTCTGGACAGATTCTCAGATCATATTTTATGTAGATAACATTCCTATTAGAGAGGTTACGCGAACAGAATCGATGGGAGGAGACTTCCCCTCTAAGCCAATGACTCTGTATGCAACAATATGGGATGCATCTGATTGGGCTACCAATGGAGGCAAATACAGAGTAAATTACAAGTATGCACCATATGTCGCTAAATTCTCCGACCTTGTCCTTCATGGTTGTGCGGTGGATCCGATTGAGCACGTAGCGAAGTGTGACAGTGCTCGAAGTTCTGAAGCAGTTCCTTCCGGTGCTACACCAGCGCAAAGAATCAAAATGGAGAACTTCAGGAAGAAACACATGACATACTCCTACTGTTATGACAGAGTCAGATACAAAGCCCCTCCATCAGAGTGTGTGATCAATCCCCAAGAAGCCGAAAGACTAAGAAAATTCGATCCCGTCACATTTGGTAGCGGCCGACATCACCATGGAAAACGACACCATCGCAGCAGAGGAAACCATGCAGAAGCTGCTTCATTTTAAGAGGAGGGGGGGGTCCATATTAAGATATATTTTTCATCCATGATTCAGTATGATTACCTGGGTTATTTTTTCTTTTTGGTGTATAGAGAGAGGGGGGCACAGAATTCCTGAATATGATGATAGTTTTGATATGGTTCCTGCTGATGGGTATGTGTATAGTTCATACCTTTAGGTACTTCCCAGGTATTTTGTCATTCATGTCTTGTGCTTTACAAATTAAATCTGTTGAATTCTGTATTTAGACCGCACCTCAGGGTTTCAATAAACTATTTAGCATGAGTTATTTATTTAAGGAATTTAGGTATGAATTATTTCTGTTGACTGCAAATTGAGTATTTAAAACATTGGTTCAACCTAAACTGTTTTATTCTTTTGTCCATGATATGCAATTATGCATACCTACCTGTCTGGTAGTTTATGTGGTTATTTATATTTTTTTAGCTTCTGGACATTGGAGTCACTTTATTTATCAATCTTAAATGGAATCCAAAGTCAAGTTGATCAATGATACAGTAGCGTCCCTGCAGGTCAGCACAGTGGGTTTCTACTTAACATTGACCAATGTTTATGTCTTCACTTTCCTTTTTCCCCTCATGTTTTGTTCATTTGGTGTATATGATTGATTGAATTGGGATTTGAACTGGTAGTTGAGATCTCTATGGACACAACATTATGTGTAGTTACCCGTTTCTGACCTACTATGTGTGTCTGCTTGTGAAGAATTATCAAAAACATACAAATTCAATGTAAAAATTTATCCAAGGATCAACTACTAATAGATCGAACTACANAATTTGTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00480	97582	100889	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH16

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0005975 carbohydrate metabolic process

GO:0006073 cellular glucan metabolic process

cellular_component

GO:0005618 cell wall

GO:0048046 apoplast

molecular_function

GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds

GO:0016762 xyloglucan:xyloglucosyl transferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000480s00023799.1	PF00722.16	Glyco_hydro_16	32	215	1.00E-56
Glyur000480s00023799.1	PF06955.7	XET_C	250	289	1.10E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	71.704
SRR1783600	control	72.074
SRR1783602	moderate drought stress	53.941
SRR1811619	moderate drought stress	53.552

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	115.278
DRR006520	Root Summer glycyrrhizin high producing strain	114.523
DRR006521	Root Winter glycyrrhizin high producing strain	52.114
DRR006522	Root Winter glycyrrhizin high producing strain	50.516
DRR006523	Root Summer glycyrrhizin low producing strain	201.141
DRR006524	Root Summer glycyrrhizin low producing strain	200.035
DRR006525	Leaf Summer glycyrrhizin high producing strain	48.808
DRR006526	Leaf Summer glycyrrhizin high producing strain	48.880

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	122.362
SRR2868004	Drought Stress (root)	119.216
SRR2967015	Control (root)	122.736

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	81.667
SRR9715740	Leaf	106.246
SRR9715741	Leaf	103.715
SRR9715739	Root	77.708
SRR9715742	Root	82.536
SRR9715743	Root	76.931

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	304.838
SRR8749028	MeJA induced 9h	146.196
SRR8749029	MeJA induced 9h	269.695
SRR8749030	Uninduced	248.322
SRR8749031	Uninduced	118.537
SRR8749032	Uninduced	106.598

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	123.511
SRR8400027	Control - Root	153.547